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| I | Rubin Kazan | - | Parma FC | 0:1 (0:0) | ||
| V | Parma FC | - | Rubin Kazan | 1:0 (0:0) | ||
| I: 14.09.2006 15:30 | V: 28.09.2006 18:30 | Campeones: Parma FC | ||||
| I | FC Levadia | - | Newcastle United | 0:1 (0:1) | ||
| V | Newcastle United | - | FC Levadia | 2:1 (0:0) | ||
| I: 14.09.2006 16:55 | V: 28.09.2006 20:30 | Campeones: Newcastle United | ||||
| I | Hertha | - | Odense BK | 2:2 (1:1) | ||
| V | Odense BK | - | Hertha | 1:0 (0:0) | ||
| I: 14.09.2006 17:00 | V: 28.09.2006 15:30 | Campeones: Odense BK | ||||
| I | Legia Warszawa | - | Austria Wien | 1:1 (1:1) | ||
| V | Austria Wien | - | Legia Warszawa | 1:0 (0:0) | ||
| I: 14.09.2006 17:30 | V: 28.09.2006 20:45 | Campeones: Austria Wien | ||||
| I | Slovan Liberec | - | Crvena Zvezda | 2:0 (1:0) | ||
| V | Crvena Zvezda | - | Slovan Liberec | 1:2 (1:1) | ||
| I: 14.09.2006 17:30 | V: 28.09.2006 20:00 | Campeones: Slovan Liberec | ||||
| I | Chernomorets Odessa | - | Hapoel Tel Aviv | 0:1 (0:0) | ||
| V | Hapoel Tel Aviv | - | Chernomorets Odessa | 3:1 (1:0) | ||
| I: 14.09.2006 18:00 | V: 28.09.2006 18:30 | Campeones: Hapoel Tel Aviv | ||||
| I | Ethnikos Achna | - | RC Lens | 0:0 (0:0) | ||
| V | RC Lens | - | Ethnikos Achna | 3:1 (1:0) | ||
| I: 14.09.2006 18:00 | V: 28.09.2006 18:00 | Campeones: RC Lens | ||||
| I | Skoda Xanthi | - | Dinamo Bucureşti | 3:4 (2:3) | ||
| V | Dinamo Bucureşti | - | Skoda Xanthi | 4:1 (1:0) | ||
| I: 14.09.2006 18:00 | V: 28.09.2006 19:00 | Campeones: Dinamo Bucureşti | ||||
| I | Lokomotiv Moskva | - | SV Zulte Waregem | 2:1 (1:0) | ||
| V | SV Zulte Waregem | - | Lokomotiv Moskva | 2:0 (0:0) | ||
| I: 14.09.2006 18:15 | V: 28.09.2006 19:00 | Campeones: SV Zulte Waregem | ||||
| I | IK Start | - | AFC Ajax | 2:5 (1:2) | ||
| V | AFC Ajax | - | IK Start | 4:0 (3:0) | ||
| I: 14.09.2006 18:15 | V: 28.09.2006 20:45 | Campeones: AFC Ajax | ||||
| I | Beşiktaş | - | CSKA Sofia | 2:0 (0:0) | ||
| V | CSKA Sofia | - | Beşiktaş | 2:2 (0:0, 2:0) pró. | ||
| I: 14.09.2006 18:45 | V: 28.09.2006 18:30 | Campeones: Beşiktaş | ||||
| I | FC Artmedia Bratislava | - | Espanyol | 2:2 (2:1) | ||
| V | Espanyol | - | FC Artmedia Bratislava | 3:1 (1:1) | ||
| I: 14.09.2006 18:45 | V: 28.09.2006 21:30 | Campeones: Espanyol | ||||
| I | Schalke | - | AS Nancy Lorraine | 1:0 (0:0) | ||
| V | AS Nancy Lorraine | - | Schalke | 3:1 (2:0) | ||
| I: 14.09.2006 19:00 | V: 28.09.2006 18:00 | Campeones: AS Nancy Lorraine | ||||
| I | Rapid Bucureşti | - | CD Nacional | 1:0 (1:0) | ||
| V | CD Nacional | - | Rapid Bucureşti | 1:2 (1:0, 1:1) pró. | ||
| I: 14.09.2006 19:00 | V: 28.09.2006 21:00 | Campeones: Rapid Bucureşti | ||||
| I | Trabzonspor | - | Osasuna | 2:2 (0:1) | ||
| V | Osasuna | - | Trabzonspor | 0:0 (0:0) | ||
| I: 14.09.2006 19:00 | V: 28.09.2006 20:45 | Campeones: Osasuna | ||||
| I | Partizan | - | FC Groningen | 4:2 (3:0) | ||
| V | FC Groningen | - | Partizan | 1:0 (0:0) | ||
| I: 14.09.2006 19:00 | V: 28.09.2006 20:00 | Campeones: Partizan | ||||
| I | Åtvidabergs FF | - | Grasshopper Club Zürich | 0:3 (0:2) | ||
| V | Grasshopper Club Zürich | - | Åtvidabergs FF | 5:0 (2:0) | ||
| I: 14.09.2006 19:30 | V: 28.09.2006 19:30 | Campeones: Grasshopper Club Zürich | ||||
| I | Sporting Braga | - | Chievo | 2:0 (1:0) | ||
| V | Chievo | - | Sporting Braga | 2:1 (1:0, 2:0) pró. | ||
| I: 14.09.2006 20:00 | V: 28.09.2006 20:45 | Campeones: Sporting Braga | ||||
| I | Derry City | - | París Saint-Germain | 0:0 (0:0) | ||
| V | París Saint-Germain | - | Derry City | 2:0 (2:0) | ||
| I: 14.09.2006 20:00 | V: 28.09.2006 21:00 | Campeones: París Saint-Germain | ||||
| I | AZ Alkmaar | - | Kayserispor | 3:2 (2:1) | ||
| V | Kayserispor | - | AZ Alkmaar | 1:1 (1:0) | ||
| I: 14.09.2006 20:00 | V: 28.09.2006 19:00 | Campeones: AZ Alkmaar | ||||
| I | Basilea | - | FK Rabotnički | 6:2 (4:0) | ||
| V | FK Rabotnički | - | Basilea | 0:1 (0:0) | ||
| I: 14.09.2006 20:00 | V: 28.09.2006 19:30 | Campeones: Basilea | ||||
| I | Slavia Praga | - | Tottenham Hotspur | 0:1 (0:1) | ||
| V | Tottenham Hotspur | - | Slavia Praga | 1:0 (0:0) | ||
| I: 14.09.2006 20:00 | V: 28.09.2006 21:00 | Campeones: Tottenham Hotspur | ||||
| I | Molde FK | - | Rangers FC | 0:0 (0:0) | ||
| V | Rangers FC | - | Molde FK | 2:0 (2:0) | ||
| I: 14.09.2006 20:05 | V: 28.09.2006 20:45 | Campeones: Rangers FC | ||||
| I | Lokomotiv Sofia | - | Feyenoord | 2:2 (2:1) | ||
| V | Feyenoord | - | Lokomotiv Sofia | 0:0 (0:0) | ||
| I: 14.09.2006 20:15 | V: 28.09.2006 19:45 | Campeones: Feyenoord | ||||
| I | Dinamo Zagreb | - | AJ Auxerre | 1:2 (0:1) | ||
| V | AJ Auxerre | - | Dinamo Zagreb | 3:1 (2:0) | ||
| I: 14.09.2006 20:15 | V: 28.09.2006 19:30 | Campeones: AJ Auxerre | ||||
| I | Standard Liège | - | Celta | 0:1 (0:1) | ||
| V | Celta | - | Standard Liège | 3:0 (1:0) | ||
| I: 14.09.2006 20:30 | V: 28.09.2006 21:00 | Campeones: Celta | ||||
| I | Maccabi Haifa | - | PFC Litex Lovech | 1:1 (1:0) | ||
| V | PFC Litex Lovech | - | Maccabi Haifa | 1:3 (1:2) | ||
| I: 14.09.2006 20:30 | V: 28.09.2006 20:00 | Campeones: Maccabi Haifa | ||||
| I | FC Sion | - | Bayer Leverkusen | 0:0 (0:0) | ||
| V | Bayer Leverkusen | - | FC Sion | 3:1 (0:0) | ||
| I: 14.09.2006 20:30 | V: 28.09.2006 20:30 | Campeones: Bayer Leverkusen | ||||
| I | Wisła Kraków | - | Iraklis Saloniki | 0:1 (0:1) | ||
| V | Iraklis Saloniki | - | Wisła Kraków | 0:2 (0:0, 0:1) pró. | ||
| I: 14.09.2006 20:30 | V: 28.09.2006 19:30 | Campeones: Wisła Kraków | ||||
| I | Panathinaikos | - | Metalurg Zaporizhya | 1:1 (1:0) | ||
| V | Metalurg Zaporizhya | - | Panathinaikos | 0:1 (0:1) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 19:00 | Campeones: Panathinaikos | ||||
| I | Heart of Midlothian | - | Sparta Praga | 0:2 (0:1) | ||
| V | Sparta Praga | - | Heart of Midlothian | 0:0 (0:0) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 21:00 | Campeones: Sparta Praga | ||||
| I | Fenerbahçe | - | Randers FC | 2:1 (1:1) | ||
| V | Randers FC | - | Fenerbahçe | 0:3 (0:0) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 20:30 | Campeones: Fenerbahçe | ||||
| I | RB Salzburg | - | Blackburn Rovers | 2:2 (1:2) | ||
| V | Blackburn Rovers | - | RB Salzburg | 2:0 (1:0) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 20:45 | Campeones: Blackburn Rovers | ||||
| I | Eintracht Frankfurt | - | Brøndby IF | 4:0 (0:0) | ||
| V | Brøndby IF | - | Eintracht Frankfurt | 2:2 (1:1) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 18:05 | Campeones: Eintracht Frankfurt | ||||
| I | Marsella | - | FK Mladá Boleslav | 1:0 (1:0) | ||
| V | FK Mladá Boleslav | - | Marsella | 4:2 (1:1) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 17:30 | Campeones: FK Mladá Boleslav | ||||
| I | MFK Ružomberok | - | Club Brugge KV | 0:1 (0:1) | ||
| V | Club Brugge KV | - | MFK Ružomberok | 1:1 (0:1) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 20:30 | Campeones: Club Brugge KV | ||||
| I | AS Livorno | - | FC Superfund | 2:0 (1:0) | ||
| V | FC Superfund | - | AS Livorno | 0:1 (0:0) | ||
| I: 14.09.2006 20:45 | V: 28.09.2006 18:30 | Campeones: AS Livorno | ||||
| I | Atromitos | - | Sevilla | 1:2 (0:2) | ||
| V | Sevilla | - | Atromitos | 4:0 (3:0) | ||
| I: 14.09.2006 21:00 | V: 28.09.2006 21:30 | Campeones: Sevilla | ||||
| I | West Ham United | - | Palermo | 0:1 (0:1) | ||
| V | Palermo | - | West Ham United | 3:0 (1:0) | ||
| I: 14.09.2006 21:00 | V: 28.09.2006 20:45 | Campeones: Palermo | ||||
| I | Vitória Setúbal | - | sc Heerenveen | 0:3 (0:0) | ||
| V | sc Heerenveen | - | Vitória Setúbal | 0:0 (0:0) | ||
| I: 14.09.2006 22:00 | V: 28.09.2006 18:45 | Campeones: sc Heerenveen | ||||
