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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | » 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 32 | 19 | 9 | 4 | 28:9 | 19 | 66 |
| 2 |
|
Eintracht Frankfurt | 32 | 18 | 8 | 6 | 35:12 | 23 | 62 |
| 3 |
|
1. FC Union Berlin | 32 | 14 | 10 | 8 | 23:20 | 3 | 52 |
| 4 |
|
FC St. Pauli | 32 | 13 | 12 | 7 | 23:15 | 8 | 51 |
| 5 |
|
TSV 1860 München | 32 | 12 | 10 | 10 | 24:21 | 3 | 46 |
| 6 |
|
Eintracht Braunschweig | 32 | 11 | 12 | 9 | 21:17 | 4 | 45 |
| 7 |
|
Fortuna Düsseldorf | 32 | 10 | 14 | 8 | 24:17 | 7 | 44 |
| 8 |
|
Dynamo Dresden | 32 | 9 | 17 | 6 | 22:19 | 3 | 44 |
| 9 |
|
SC Paderborn 07 | 32 | 10 | 14 | 8 | 19:16 | 3 | 44 |
| 10 |
|
FSV Frankfurt | 32 | 10 | 11 | 11 | 21:26 | -5 | 41 |
| 11 |
|
Alemannia Aachen | 32 | 8 | 16 | 8 | 17:16 | 1 | 40 |
| 12 |
|
VfL Bochum | 32 | 9 | 13 | 10 | 20:23 | -3 | 40 |
| 13 |
|
Energie Cottbus | 32 | 9 | 12 | 11 | 11:20 | -9 | 39 |
| 14 |
|
Ingolstadt | 32 | 6 | 15 | 11 | 16:22 | -6 | 33 |
| 15 |
|
MSV Duisburg | 32 | 5 | 17 | 10 | 15:19 | -4 | 32 |
| 16 |
|
Hansa Rostock | 32 | 4 | 15 | 13 | 10:20 | -10 | 27 |
| 17 |
|
Karlsruher SC | 32 | 4 | 10 | 18 | 14:33 | -19 | 22 |
| 18 |
|
Erzgebirge Aue | 32 | 1 | 17 | 14 | 12:30 | -18 | 20 |
| Ascenso | |
| Permanencia | |
| Permanencia | |
| Descenso |
