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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | » 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC St. Pauli | 25 | 10 | 12 | 3 | 16:9 | 7 | 42 |
| 2 |
|
Karlsruher SC | 25 | 8 | 16 | 1 | 16:5 | 11 | 40 |
| 3 |
|
1. FC Union Berlin | 25 | 10 | 10 | 5 | 16:8 | 8 | 40 |
| 4 |
|
Colonia | 25 | 8 | 14 | 3 | 16:4 | 12 | 38 |
| 5 |
|
SV Sandhausen | 25 | 7 | 17 | 1 | 12:4 | 8 | 38 |
| 6 |
|
FSV Frankfurt | 25 | 10 | 8 | 7 | 17:15 | 2 | 38 |
| 7 |
|
SC Paderborn 07 | 25 | 8 | 11 | 6 | 16:15 | 1 | 35 |
| 8 |
|
VfL Bochum | 25 | 8 | 11 | 6 | 12:11 | 1 | 35 |
| 9 |
|
SpVgg Greuther Fürth | 25 | 8 | 7 | 10 | 17:17 | 0 | 31 |
| 10 |
|
Fortuna Düsseldorf | 25 | 7 | 10 | 8 | 11:14 | -3 | 31 |
| 11 |
|
Energie Cottbus | 25 | 6 | 11 | 8 | 17:19 | -2 | 29 |
| 12 |
|
Ingolstadt | 25 | 5 | 14 | 6 | 11:14 | -3 | 29 |
| 13 |
|
1. FC Kaiserslautern | 25 | 5 | 13 | 7 | 14:13 | 1 | 28 |
| 14 |
|
TSV 1860 München | 25 | 3 | 16 | 6 | 10:13 | -3 | 25 |
| 15 |
|
VfR Aalen | 25 | 4 | 13 | 8 | 11:19 | -8 | 25 |
| 16 |
|
Erzgebirge Aue | 25 | 6 | 6 | 13 | 13:22 | -9 | 24 |
| 17 |
|
Dynamo Dresden | 25 | 3 | 14 | 8 | 9:18 | -9 | 23 |
| 18 |
|
Arminia Bielefeld | 25 | 2 | 11 | 12 | 7:21 | -14 | 17 |
| Ascenso | |
| Permanencia | |
| Permanencia | |
| Descenso |
