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| 21.10.2016 | 19:00 | Bayern Múnich II | - | 1. FC Schweinfurt 05 | 2:1 (1:0) | |
| 19:00 | SpVgg Bayreuth | - | SpVgg Unterhaching | 0:4 (0:2) | ||
| 19:30 | FC Memmingen | - | FV Illertissen | 1:2 (0:1) | ||
| 22.10.2016 | 13:00 | VfR Garching | - | SV Seligenporten | 3:1 (1:1) | |
| 14:00 | SpVgg Bayern Hof | - | Ingolstadt II | 1:1 (0:1) | ||
| 14:00 | Augsburgo II | - | SV Schalding-Heining | 3:0 (1:0) | ||
| 14:00 | TSV 1860 München II | - | TSV Buchbach | 3:1 (1:0) | ||
| 23.10.2016 | 14:00 | SpVgg Greuther Fürth II | - | 1. FC Nürnberg II | 0:1 (0:0) | |
| 14:00 | TSV 1860 Rosenheim | - | Wacker Burghausen | 1:2 (0:2) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 16 | 14 | 2 | 0 | 50:9 | 41 | 44 |
| 2 |
|
VfR Garching | 16 | 9 | 2 | 5 | 33:27 | 6 | 29 |
| 3 |
|
Augsburgo II | 16 | 7 | 7 | 2 | 36:17 | 19 | 28 |
| 4 |
|
Bayern Múnich II | 16 | 7 | 7 | 2 | 23:16 | 7 | 28 |
| 5 |
|
1. FC Nürnberg II | 16 | 8 | 4 | 4 | 36:30 | 6 | 28 |
| 6 |
|
FV Illertissen | 16 | 7 | 2 | 7 | 23:27 | -4 | 23 |
| 7 |
|
FC Memmingen | 16 | 5 | 6 | 5 | 29:24 | 5 | 21 |
| 8 |
|
SpVgg Bayreuth | 16 | 6 | 3 | 7 | 31:31 | 0 | 21 |
| 9 |
|
Wacker Burghausen | 16 | 5 | 5 | 6 | 24:26 | -2 | 20 |
| 10 |
|
1. FC Schweinfurt 05 | 16 | 6 | 2 | 8 | 24:30 | -6 | 20 |
| 11 |
|
SpVgg Greuther Fürth II | 16 | 5 | 4 | 7 | 22:22 | 0 | 19 |
| 12 |
|
TSV 1860 Rosenheim | 16 | 5 | 3 | 8 | 17:22 | -5 | 18 |
| 13 |
|
Ingolstadt II | 16 | 3 | 7 | 6 | 24:32 | -8 | 16 |
| 14 |
|
SV Seligenporten | 16 | 4 | 4 | 8 | 21:40 | -19 | 16 |
| 15 |
|
TSV Buchbach | 16 | 4 | 3 | 9 | 20:33 | -13 | 15 |
| 16 |
|
SV Schalding-Heining | 16 | 2 | 6 | 8 | 22:29 | -7 | 12 |
| 17 |
|
SpVgg Bayern Hof | 16 | 2 | 2 | 12 | 18:42 | -24 | 8 |
| 18 |
|
TSV 1860 München II | 16 | 9 | 3 | 4 | 0:0 | -6 | -33 |
| Playoff | |
| Permanencia | |
| Descenso |
