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| 18.11.2016 | 19:00 | Bayern Múnich II | - | TSV Buchbach | 4:0 (3:0) | |
| 19:00 | Augsburgo II | - | Wacker Burghausen | 0:1 (0:1) | ||
| 19.11.2016 | 13:00 | VfR Garching | - | SpVgg Bayreuth | 1:2 (1:1) | |
| 14:00 | FC Memmingen | - | Ingolstadt II | 3:0 (1:0) | ||
| 14:00 | SpVgg Greuther Fürth II | - | SpVgg Unterhaching | 0:3 (0:1) | ||
| 14:00 | 1. FC Schweinfurt 05 | - | FV Illertissen | 1:0 (0:0) | ||
| 14:00 | SpVgg Bayern Hof | - | 1. FC Nürnberg II | 2:5 (2:2) | ||
| 14:00 | TSV 1860 Rosenheim | - | TSV 1860 München II | 2:0 (1:0) | ||
| 04.04.2017 | 18:00 | SV Schalding-Heining | - | SV Seligenporten | 1:0 (0:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 20 | 17 | 3 | 0 | 65:10 | 55 | 54 |
| 2 |
|
Bayern Múnich II | 20 | 10 | 8 | 2 | 33:19 | 14 | 38 |
| 3 |
|
Augsburgo II | 20 | 9 | 8 | 3 | 43:20 | 23 | 35 |
| 4 |
|
1. FC Nürnberg II | 20 | 9 | 5 | 6 | 48:43 | 5 | 32 |
| 5 |
|
VfR Garching | 20 | 10 | 2 | 8 | 39:42 | -3 | 32 |
| 6 |
|
FC Memmingen | 20 | 8 | 6 | 6 | 40:27 | 13 | 30 |
| 7 |
|
1. FC Schweinfurt 05 | 20 | 9 | 3 | 8 | 37:34 | 3 | 30 |
| 8 |
|
Wacker Burghausen | 20 | 8 | 5 | 7 | 29:28 | 1 | 29 |
| 9 |
|
SpVgg Bayreuth | 20 | 8 | 4 | 8 | 36:34 | 2 | 28 |
| 10 |
|
FV Illertissen | 20 | 8 | 2 | 10 | 25:32 | -7 | 26 |
| 11 |
|
SpVgg Greuther Fürth II | 20 | 6 | 4 | 10 | 25:30 | -5 | 22 |
| 12 |
|
TSV 1860 Rosenheim | 20 | 6 | 4 | 10 | 23:31 | -8 | 22 |
| 13 |
|
Ingolstadt II | 20 | 4 | 9 | 7 | 28:38 | -10 | 21 |
| 14 |
|
SV Schalding-Heining | 20 | 4 | 7 | 9 | 28:40 | -12 | 19 |
| 15 |
|
SV Seligenporten | 20 | 5 | 4 | 11 | 26:48 | -22 | 19 |
| 16 |
|
TSV Buchbach | 20 | 5 | 3 | 12 | 24:45 | -21 | 18 |
| 17 |
|
SpVgg Bayern Hof | 20 | 2 | 3 | 15 | 24:54 | -30 | 9 |
| 18 |
|
TSV 1860 München II | 20 | 9 | 6 | 5 | 0:0 | -8 | -30 |
| Playoff | |
| Permanencia | |
| Descenso |
