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| Clasificación | » En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Anzhi Makhachkala | 9 | 8 | 1 | 0 | 21:4 | 17 | 25 |
| 2 |
|
Spartak Moskva | 9 | 7 | 1 | 1 | 17:6 | 11 | 22 |
| 3 |
|
FK Saturn | 8 | 6 | 2 | 0 | 11:2 | 9 | 20 |
| 4 |
|
Lokomotiv Moskva | 8 | 6 | 1 | 1 | 8:4 | 4 | 19 |
| 5 |
|
Chernomorets Novorossisk | 7 | 6 | 0 | 1 | 18:4 | 14 | 18 |
| 6 |
|
Dinamo Moskva | 8 | 4 | 4 | 0 | 11:5 | 6 | 16 |
| 7 |
|
Krylia Sovetov | 9 | 5 | 0 | 4 | 12:13 | -1 | 15 |
| 8 |
|
Zenit | 7 | 4 | 2 | 1 | 12:1 | 11 | 14 |
| 9 |
|
Torpedo Moskva | 7 | 4 | 2 | 1 | 10:6 | 4 | 14 |
| 10 |
|
Alania Vladikavkaz | 7 | 3 | 2 | 2 | 10:9 | 1 | 11 |
| 11 |
|
Fakel Voronezh | 9 | 2 | 5 | 2 | 11:11 | 0 | 11 |
| 12 |
|
Rotor Volgograd (1929-2005) | 9 | 3 | 2 | 4 | 13:19 | -6 | 11 |
| 13 |
|
CSKA Moscú | 8 | 1 | 3 | 4 | 7:12 | -5 | 6 |
| 14 |
|
Rostselmash Rostov | 7 | 1 | 3 | 3 | 5:6 | -1 | 6 |
| 15 |
|
Uralan Elista | 7 | 1 | 2 | 4 | 5:8 | -3 | 5 |
| 16 |
|
Lok. Nizhni Novgorod | 9 | 0 | 2 | 7 | 3:13 | -10 | 2 |
| Champions League | |
| CL Ronda previa | |
| UEFA Cup | |
| Descenso |
