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| Clasificación | » En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Varnsdorf | 9 | 7 | 1 | 1 | 19:6 | 13 | 22 |
| 2 |
|
MFK Vyškov | 8 | 6 | 1 | 1 | 19:7 | 12 | 19 |
| 3 |
|
MFK Karviná | 7 | 6 | 0 | 1 | 14:4 | 10 | 18 |
| 4 |
|
FK Viagem Příbram | 9 | 4 | 5 | 0 | 18:7 | 11 | 17 |
| 5 |
|
Sigma Olomouc B | 9 | 4 | 3 | 2 | 14:13 | 1 | 15 |
| 6 |
|
FK Dukla Praha | 8 | 4 | 2 | 2 | 13:5 | 8 | 14 |
| 7 |
|
FK MAS Táborsko | 7 | 4 | 2 | 1 | 8:4 | 4 | 14 |
| 8 |
|
Slavia Praha B | 9 | 4 | 1 | 4 | 17:18 | -1 | 13 |
| 9 |
|
1. SK Prostějov | 8 | 3 | 3 | 2 | 16:12 | 4 | 12 |
| 10 |
|
FK Třinec | 9 | 3 | 3 | 3 | 14:15 | -1 | 12 |
| 11 |
|
SK Líšeň | 7 | 3 | 2 | 2 | 12:5 | 7 | 11 |
| 12 |
|
FC Sellier & Bellot Vlašim | 8 | 3 | 2 | 3 | 15:11 | 4 | 11 |
| 13 |
|
MFK Chrudim | 8 | 3 | 2 | 3 | 12:8 | 4 | 11 |
| 14 |
|
SFC Opava | 8 | 3 | 2 | 3 | 8:5 | 3 | 11 |
| 15 |
|
Vysočina Jihlava | 7 | 2 | 2 | 3 | 7:8 | -1 | 8 |
| 16 |
|
AC Sparta Praha B | 7 | 2 | 2 | 3 | 6:9 | -3 | 8 |
| Ascenso | |
| Playoff | |
| Descenso |
