| 1. Jornada | 27.07.2008 | NK Inter Zaprešić | - | HNK Šibenik | 2:3 |  |
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| 2. Jornada | 03.08.2008 | Dinamo Zagreb | - | NK Inter Zaprešić | 3:1 | ||||
| 3. Jornada | 10.08.2008 | NK Inter Zaprešić | - | HNK Rijeka | 2:2 |  |
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| 4. Jornada | 17.08.2008 | NK Inter Zaprešić | - | NK Croatia Sesvete | 3:2 | ||||
| 5. Jornada | 24.08.2008 | HNK Cibalia | - | NK Inter Zaprešić | 4:3 |  |
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| 7. Jornada | 14.09.2008 | NK Varteks | - | NK Inter Zaprešić | 1:0 | ||||
| 8. Jornada | 21.09.2008 | NK Inter Zaprešić | - | NK Zagreb | 1:1 | ||||
| 9. Jornada | 28.09.2008 | Hajduk Split | - | NK Inter Zaprešić | 3:3 | ||||
| 11. Jornada | 19.10.2008 | NK Osijek | - | NK Inter Zaprešić | 2:1 | |
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| 13. Jornada | 02.11.2008 | NK Inter Zaprešić | - | Dinamo Zagreb | 1:3 | |
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| 15. Jornada | 16.11.2008 | NK Croatia Sesvete | - | NK Inter Zaprešić | 1:3 | |
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| 16. Jornada | 23.11.2008 | NK Inter Zaprešić | - | HNK Cibalia | 1:2 | |
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| 18. Jornada | 07.12.2008 | NK Inter Zaprešić | - | NK Varteks | 2:3 | |
Croacia