| 1. Jornada | 18.01.2004 | Atlas Guadalajara | - | Puebla FC | 1:1 | ||||
| 2. Jornada | 25.01.2004 | Puebla FC | - | Real San Luis | 1:2 | ||||
| 3. Jornada | 01.02.2004 | Santos Laguna | - | Puebla FC | 2:0 | ||||
| 4. Jornada | 08.02.2004 | Puebla FC | - | Atlante | 1:1 | ||||
| 5. Jornada | 14.02.2004 | Jaguares Chiapas | - | Puebla FC | 3:1 |  |
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| 6. Jornada | 22.02.2004 | Puebla FC | - | CF Pachuca | 3:0 | |
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| 7. Jornada | 26.02.2004 | Monarcas Morelia | - | Puebla FC | 1:0 | |
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| 8. Jornada | 29.02.2004 | Puebla FC | - | Gallos Blancos (old) | 1:0 | |
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| 9. Jornada | 07.03.2004 | UANL Tigres | - | Puebla FC | 2:3 |  |
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| 11. Jornada | 21.03.2004 | Deportivo Guadalajara | - | Puebla FC | 0:0 | ||||
| 12. Jornada | 28.03.2004 | Puebla FC | - | Club Necaxa | 2:2 | |
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| 13. Jornada | 04.04.2004 | Puebla FC | - | Club Irapuato | 6:0 | ||||
| 14. Jornada | 11.04.2004 | Pumas UNAM | - | Puebla FC | 3:0 | ||||
| 15. Jornada | 18.04.2004 | Puebla FC | - | Cruz Azul | 3:2 | ||||
| 16. Jornada | 24.04.2004 | Veracruz (old) | - | Puebla FC | 2:1 | |
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| 18. Jornada | 09.05.2004 | CF Monterrey | - | Puebla FC | 2:2 | |
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| 19. Jornada | 16.05.2004 | Puebla FC | - | CF América | 1:3 |
Colombia