| 2. Jornada | 21.07.2012 | FC Nitra | - | MFK Ružomberok | 1:1 | ||||
| 3. Jornada | 28.07.2012 | Zlaté Moravce | - | FC Nitra | 0:2 | ||||
| 4. Jornada | 04.08.2012 | Spartak Myjava | - | FC Nitra | 0:2 | ||||
| 5. Jornada | 11.08.2012 | FC Nitra | - | FK Dukla Banská Bystrica | 1:1 | ||||
| 6. Jornada | 18.08.2012 | 1. FC Tatran Prešov | - | FC Nitra | 1:0 | ||||
| 7. Jornada | 25.08.2012 | FC Nitra | - | MFK Košice | 4:1 | ||||
| 8. Jornada | 01.09.2012 | MŠK Žilina | - | FC Nitra | 1:1 |  |
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| 9. Jornada | 14.09.2012 | FC Nitra | - | Spartak Trnava | 1:3 | ||||
| 12. Jornada | 06.10.2012 | FC Nitra | - | AS Trenčín | 1:2 | ||||
| 13. Jornada | 20.10.2012 | MFK Ružomberok | - | FC Nitra | 2:1 | ||||
| 21. Jornada | 10.03.2013 | FC Nitra | - | Slovan Bratislava | 0:3 | |
Eslovaquia