| 3. Jornada | 10.09.2016 | Levadiakos | - | Panathinaikos | 0:3 | ||||
| 4. Jornada | 18.09.2016 | Panathinaikos | - | PAS Giannina | 4:0 | ||||
| 5. Jornada | 24.09.2016 | Panetolikos | - | Panathinaikos | 0:0 | ||||
| 6. Jornada | 02.10.2016 | Panathinaikos | - | Asteras Tripolis | 3:1 |  |
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| 8. Jornada | 24.10.2016 | Veria FC | - | Panathinaikos | 1:1 | ||||
| 9. Jornada | 30.10.2016 | Panathinaikos | - | AEP Iraklis FC | 2:0 | ||||
| 12. Jornada | 27.11.2016 | Panionios GSS | - | Panathinaikos | 1:1 | |
Bulgaria