| 1. Jornada | 16.07.2016 | Rudar Velenje | - | NK Krško | 1:1 |  |
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| 2. Jornada | 24.07.2016 | NK Krško | - | NK Domžale | 1:1 | ||||
| 4. Jornada | 06.08.2016 | NK Krško | - | ND Gorica | 1:0 | ||||
| 6. Jornada | 21.08.2016 | NK Krško | - | NK Celje | 1:0 | ||||
| 7. Jornada | 26.08.2016 | NK Radomlje | - | NK Krško | 2:2 | ||||
| 8. Jornada | 10.09.2016 | FC Koper | - | NK Krško | 1:0 | ||||
| 9. Jornada | 17.09.2016 | NK Krško | - | NK Maribor | 1:2 | ||||
| 11. Jornada | 24.09.2016 | NK Domžale | - | NK Krško | 5:0 | ||||
| 13. Jornada | 14.10.2016 | ND Gorica | - | NK Krško | 1:1 | ||||
| 22. Jornada | 26.02.2017 | NK Krško | - | ND Gorica | 1:2 | ||||
| 25. Jornada | 18.03.2017 | NK Radomlje | - | NK Krško | 0:2 | ||||
| 27. Jornada | 01.04.2017 | NK Krško | - | NK Maribor | 1:1 | ||||
| 31. Jornada | 29.04.2017 | ND Gorica | - | NK Krško | 0:0 | |
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| 32. Jornada | 05.05.2017 | NK Krško | - | NK Aluminij | 1:1 | ||||
| 34. Jornada | 16.05.2017 | NK Krško | - | NK Radomlje | 2:0 |
Eslovenia