| 1. Jornada | 14.07.2012 | AS Trenčín | - | FC Nitra | 5:0 | ||||
| 4. Jornada | 04.08.2012 | Spartak Myjava | - | FC Nitra | 0:2 | ||||
| 5. Jornada | 11.08.2012 | FC Nitra | - | FK Dukla Banská Bystrica | 1:1 | ||||
| 6. Jornada | 18.08.2012 | 1. FC Tatran Prešov | - | FC Nitra | 1:0 | ||||
| 7. Jornada | 25.08.2012 | FC Nitra | - | MFK Košice | 4:1 |  |
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| 8. Jornada | 01.09.2012 | MŠK Žilina | - | FC Nitra | 1:1 |  |
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| 9. Jornada | 14.09.2012 | FC Nitra | - | Spartak Trnava | 1:3 | ||||
| 10. Jornada | 21.09.2012 | Slovan Bratislava | - | FC Nitra | 5:2 | |
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| 11. Jornada | 30.09.2012 | FC Nitra | - | FK Senica | 0:1 | ||||
| 13. Jornada | 20.10.2012 | MFK Ružomberok | - | FC Nitra | 2:1 | ||||
| 14. Jornada | 27.10.2012 | FC Nitra | - | Zlaté Moravce | 1:1 | ||||
| 15. Jornada | 03.11.2012 | FC Nitra | - | Spartak Myjava | 0:2 | ||||
| 16. Jornada | 10.11.2012 | FK Dukla Banská Bystrica | - | FC Nitra | 2:0 | ||||
| 17. Jornada | 17.11.2012 | FC Nitra | - | 1. FC Tatran Prešov | 4:1 | |
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| 18. Jornada | 24.11.2012 | MFK Košice | - | FC Nitra | 4:0 | |
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| 20. Jornada | 02.03.2013 | Spartak Trnava | - | FC Nitra | 2:0 | ||||
| 21. Jornada | 10.03.2013 | FC Nitra | - | Slovan Bratislava | 0:3 | ||||
| 22. Jornada | 15.03.2013 | FK Senica | - | FC Nitra | 2:1 |
Eslovaquia