| 1. Jornada | 25.08.2012 | Levadiakos | - | Panathinaikos | 0:1 | ||||
| 2. Jornada | 31.08.2012 | Panathinaikos | - | PAS Giannina | 1:1 | ||||
| 3. Jornada | 15.09.2012 | Panthrakikos | - | Panathinaikos | 1:0 |  |
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| 4. Jornada | 24.09.2012 | Panathinaikos | - | Atromitos | 1:1 | |
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| 5. Jornada | 30.09.2012 | Panathinaikos | - | Asteras Tripolis | 0:0 | ||||
| 6. Jornada | 07.10.2012 | Skoda Xanthi | - | Panathinaikos | 1:2 | |
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| 7. Jornada | 21.10.2012 | Panathinaikos | - | Aris Saloniki | 1:1 | ||||
| 9. Jornada | 04.11.2012 | Panathinaikos | - | AEK Athen | 1:0 | ||||
| 10. Jornada | 12.11.2012 | AO Kerkyra | - | Panathinaikos | 0:0 | ||||
| 11. Jornada | 18.11.2012 | Panathinaikos | - | PAOK Saloniki | 2:0 | ||||
| 12. Jornada | 25.11.2012 | Platanias Chanion | - | Panathinaikos | 2:1 | ||||
| 13. Jornada | 02.12.2012 | Panionios GSS | - | Panathinaikos | 1:2 | ||||
| 14. Jornada | 09.12.2012 | Panathinaikos | - | Olympiacos | 2:2 | ||||
| 15. Jornada | 16.12.2012 | Veria FC | - | Panathinaikos | 3:0 | ||||
| 16. Jornada | 05.01.2013 | Panathinaikos | - | Levadiakos | 1:2 | ||||
| 18. Jornada | 19.01.2013 | Panathinaikos | - | Panthrakikos | 1:1 | ||||
| 19. Jornada | 27.01.2013 | Atromitos | - | Panathinaikos | 1:2 |
Grecia