| 33. Jornada | 03.03.2012 | Terek Grozny | - | FK Tom Tomsk | 1:0 | ||||
| 34. Jornada | 12.03.2012 | FK Tom Tomsk | - | Volga Nizhniy Novgorod | 1:0 |  |
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| 35. Jornada | 18.03.2012 | FK Amkar Perm | - | FK Tom Tomsk | 0:0 | ||||
| 36. Jornada | 24.03.2012 | FK Tom Tomsk | - | Krylia Sovetov | 0:0 | ||||
| 37. Jornada | 30.03.2012 | Spartak Nalchik | - | FK Tom Tomsk | 0:2 | ||||
| 38. Jornada | 08.04.2012 | FK Krasnodar | - | FK Tom Tomsk | 3:1 | ||||
| 39. Jornada | 14.04.2012 | FK Tom Tomsk | - | Terek Grozny | 3:0 | ||||
| 40. Jornada | 21.04.2012 | Volga Nizhniy Novgorod | - | FK Tom Tomsk | 2:0 | ||||
| 41. Jornada | 27.04.2012 | FK Tom Tomsk | - | FK Amkar Perm | 0:0 | ||||
| 42. Jornada | 03.05.2012 | Krylia Sovetov | - | FK Tom Tomsk | 1:0 | ||||
| 43. Jornada | 07.05.2012 | FK Tom Tomsk | - | Spartak Nalchik | 1:1 | ||||
| 44. Jornada | 13.05.2012 | FK Tom Tomsk | - | FK Rostov | 2:1 |
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