| 3. Jornada | 12.03.2016 | FC Flora | - | JK Narva Trans | 3:0 | ||||
| 4. Jornada | 18.03.2016 | JK Narva Trans | - | FC Levadia | 1:1 | ||||
| 5. Jornada | 02.04.2016 | JK Narva Trans | - | Rakvere JK Tarvas | 2:2 | ||||
| 6. Jornada | 05.04.2016 | JK Narva Trans | - | Paide Linnameeskond | 2:3 | ||||
| 7. Jornada | 09.04.2016 | JK Nõmme Kalju | - | JK Narva Trans | 6:0 |  |
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| 8. Jornada | 16.04.2016 | JK Narva Trans | - | Pärnu Linnameeskond | 4:0 | |
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| 9. Jornada | 23.04.2016 | JK Narva Trans | - | FC Infonet | 0:3 | |
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| 10. Jornada | 29.04.2016 | Rakvere JK Tarvas | - | JK Narva Trans | 0:1 | ||||
| 11. Jornada | 06.05.2016 | Pärnu Linnameeskond | - | JK Narva Trans | 0:1 | ||||
| 15. Jornada | 10.05.2016 | FC Levadia | - | JK Narva Trans | 1:0 | |
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| 13. Jornada | 17.05.2016 | FC Infonet | - | JK Narva Trans | 2:1 | ||||
| 16. Jornada | 19.06.2016 | JK Narva Trans | - | JK Tammeka | 4:1 | ||||
| 17. Jornada | 02.07.2016 | Paide Linnameeskond | - | JK Narva Trans | 3:2 | ||||
| 18. Jornada | 08.07.2016 | JK Sillamäe Kalev | - | JK Narva Trans | 3:0 |
Estonia