| 1. Jornada | 25.07.2009 | Dinamo Zagreb | - | NK Istra 1961 | 7:1 | ||||
| 2. Jornada | 01.08.2009 | NK Istra 1961 | - | Lokomotiva Zagreb | 3:1 | ||||
| 3. Jornada | 08.08.2009 | NK Međimurje | - | NK Istra 1961 | 4:2 | ||||
| 4. Jornada | 15.08.2009 | NK Istra 1961 | - | NK Varteks | 0:1 | ||||
| 5. Jornada | 22.08.2009 | NK Croatia Sesvete | - | NK Istra 1961 | 2:2 | ||||
| 6. Jornada | 29.08.2009 | NK Istra 1961 | - | NK Zagreb | 2:1 | ||||
| 7. Jornada | 12.09.2009 | NK Osijek | - | NK Istra 1961 | 3:0 | ||||
| 8. Jornada | 19.09.2009 | NK Istra 1961 | - | HNK Cibalia | 0:0 | ||||
| 9. Jornada | 26.09.2009 | NK Zadar | - | NK Istra 1961 | 1:1 | ||||
| 10. Jornada | 03.10.2009 | NK Istra 1961 | - | Hajduk Split | 0:1 | ||||
| 11. Jornada | 17.10.2009 | Slaven Belupo | - | NK Istra 1961 | 3:0 | ||||
| 12. Jornada | 24.10.2009 | NK Istra 1961 | - | HNK Šibenik | 1:2 | ||||
| 13. Jornada | 30.10.2009 | NK Inter Zaprešić | - | NK Istra 1961 | 1:0 | ||||
| 14. Jornada | 07.11.2009 | NK Istra 1961 | - | NK Karlovac | 2:0 | ||||
| 15. Jornada | 21.11.2009 | HNK Rijeka | - | NK Istra 1961 | 2:0 | ||||
| 17. Jornada | 05.12.2009 | Lokomotiva Zagreb | - | NK Istra 1961 | 2:1 | ||||
| 22. Jornada | 27.03.2010 | NK Istra 1961 | - | NK Osijek | 1:3 |
Bosnia y Herzegovina