| 13. Jornada | 27.11.2016 | Balzan FC | - | Pembroke Athleta FC | 4:0 |  |
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| 14. Jornada | 03.12.2016 | Pembroke Athleta FC | - | Valletta FC | 0:3 | |
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| 15. Jornada | 10.12.2016 | Hibernians FC | - | Pembroke Athleta FC | 1:1 | ||||
| 16. Jornada | 18.12.2016 | Pembroke Athleta FC | - | Gżira United | 0:0 |  |
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| 30. Jornada | 15.04.2017 | Pembroke Athleta FC | - | Tarxien Rainbows | 1:1 | ||||
| 31. Jornada | 22.04.2017 | Hamrun Spartans | - | Pembroke Athleta FC | 1:2 | ||||
| 33. Jornada | 05.05.2017 | Mosta FC | - | Pembroke Athleta FC | 4:2 |
Malta