| 27. Jornada | 27.02.2021 | Alania Vladikavkaz | - | FK Tom Tomsk | 2:3 |  |
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| 28. Jornada | 06.03.2021 | Tekstilshchik Ivanovo | - | FK Tom Tomsk | 1:1 | |
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| 29. Jornada | 10.03.2021 | FK Tom Tomsk | - | Krylia Sovetov | 1:3 | ||||
| 30. Jornada | 14.03.2021 | Volgar Astrakhan | - | FK Tom Tomsk | 2:1 | |
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| 31. Jornada | 20.03.2021 | FK Tom Tomsk | - | Fakel Voronezh | 0:3 | ||||
| 32. Jornada | 24.03.2021 | Shinnik Yaroslavl | - | FK Tom Tomsk | 2:3 | |
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| 33. Jornada | 28.03.2021 | FK Tom Tomsk | - | Torpedo Moskva | 1:0 | ||||
| 34. Jornada | 03.04.2021 | Akron Tolyatti | - | FK Tom Tomsk | 0:0 | ||||
| 35. Jornada | 07.04.2021 | FK Tom Tomsk | - | FK Krasnodar 2 | 1:1 | |
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| 36. Jornada | 11.04.2021 | Baltika Kaliningrad | - | FK Tom Tomsk | 0:1 | ||||
| 37. Jornada | 17.04.2021 | FK Tom Tomsk | - | Veles Moskva | 0:0 | ||||
| 38. Jornada | 24.04.2021 | SKA-Khabarovsk | - | FK Tom Tomsk | 1:1 | ||||
| 39. Jornada | 28.04.2021 | FK Tom Tomsk | - | FK Chayka | 3:0 | ||||
| 40. Jornada | 02.05.2021 | FK Orenburg | - | FK Tom Tomsk | 2:0 | ||||
| 41. Jornada | 08.05.2021 | FK Tom Tomsk | - | Enisey Krasnoyarsk | 1:0 | ||||
| 42. Jornada | 15.05.2021 | FK Tom Tomsk | - | FK Nizhny Novgorod | 1:1 | |
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Rusia