| 1. Jornada | 11.07.2016 | FK Tosno | - | FK Khimki | 1:1 | ||||
| 10. Jornada | 28.08.2016 | Shinnik Yaroslavl | - | FK Khimki | 2:0 | ||||
| 11. Jornada | 02.09.2016 | FK Khimki | - | FK Tyumen | 3:2 |  |
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| 23. Jornada | 19.11.2016 | Sibir Novosibirsk | - | FK Khimki | 1:0 | ||||
| 26. Jornada | 12.03.2017 | FK Khimki | - | Fakel Voronezh | 0:0 | |
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| 28. Jornada | 26.03.2017 | FK Khimki | - | Shinnik Yaroslavl | 3:0 | ||||
| 29. Jornada | 01.04.2017 | FK Tyumen | - | FK Khimki | 1:1 | ||||
| 30. Jornada | 08.04.2017 | FK Khimki | - | Enisey Krasnoyarsk | 2:2 | |
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| 31. Jornada | 12.04.2017 | Dinamo Moskva | - | FK Khimki | 0:0 | |
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| 33. Jornada | 23.04.2017 | Zenit 2 | - | FK Khimki | 1:3 | ||||
| 34. Jornada | 29.04.2017 | FK Khimki | - | Volgar Astrakhan | 1:1 | ||||
| 35. Jornada | 06.05.2017 | Spartak Nalchik | - | FK Khimki | 1:1 | ||||
| 36. Jornada | 10.05.2017 | FK Khimki | - | Luch-Energiya Vladivostok | 2:2 | ||||
| 37. Jornada | 14.05.2017 | Spartak Moskva 2 | - | FK Khimki | 4:0 |
Georgia