| 1. Jornada | 19.07.2006 | FC Aarau | - | FC Thun | 1:1 | ||||
| 2. Jornada | 23.07.2006 | FC Thun | - | BSC Young Boys | 0:0 | ||||
| 3. Jornada | 29.07.2006 | Grasshopper Club Zürich | - | FC Thun | 4:1 | ||||
| 4. Jornada | 06.08.2006 | FC Thun | - | FC Schaffhausen | 1:0 |  |
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| 5. Jornada | 13.08.2006 | Basilea | - | FC Thun | 4:1 | ||||
| 6. Jornada | 21.08.2006 | FC Thun | - | FC St. Gallen | 0:2 | ||||
| 8. Jornada | 16.09.2006 | FC Zürich | - | FC Thun | 5:0 | ||||
| 9. Jornada | 24.09.2006 | FC Thun | - | FC Luzern | 1:1 | ||||
| 10. Jornada | 03.10.2006 | FC Thun | - | FC Aarau | 2:1 |  |
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| 12. Jornada | 21.10.2006 | FC Thun | - | Grasshopper Club Zürich | 0:1 | ||||
| 14. Jornada | 05.11.2006 | FC Thun | - | Basilea | 1:1 | ||||
| 13. Jornada | 08.11.2006 | FC Schaffhausen | - | FC Thun | 0:0 | ||||
| 15. Jornada | 19.11.2006 | FC St. Gallen | - | FC Thun | 1:2 |  |
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| 16. Jornada | 26.11.2006 | FC Sion | - | FC Thun | 3:0 | ||||
| 17. Jornada | 02.12.2006 | FC Thun | - | FC Zürich | 0:2 | ||||
| 22. Jornada | 04.03.2007 | FC Aarau | - | FC Thun | 0:0 | |
Bosnia y Herzegovina