| 1. Jornada | 16.07.2013 | FK Amkar Perm | - | FK Tom Tomsk | 2:0 | ||||
| 2. Jornada | 20.07.2013 | FK Tom Tomsk | - | Kuban Krasnodar (1928-2018) | 1:2 | ||||
| 3. Jornada | 27.07.2013 | FK Rostov | - | FK Tom Tomsk | 3:0 | ||||
| 6. Jornada | 24.08.2013 | FK Tom Tomsk | - | CSKA Moscú | 1:2 | ||||
| 7. Jornada | 01.09.2013 | Spartak Moskva | - | FK Tom Tomsk | 2:1 | ||||
| 8. Jornada | 15.09.2013 | FK Tom Tomsk | - | Anzhi Makhachkala | 2:2 |  |
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| 9. Jornada | 22.09.2013 | Rubin Kazan | - | FK Tom Tomsk | 1:2 | ||||
| 10. Jornada | 26.09.2013 | FK Tom Tomsk | - | Volga Nizhniy Novgorod | 1:0 | ||||
| 12. Jornada | 06.10.2013 | FK Tom Tomsk | - | Zenit | 0:3 | ||||
| 14. Jornada | 26.10.2013 | FK Tom Tomsk | - | Terek Grozny | 0:0 | ||||
| 15. Jornada | 02.11.2013 | Dinamo Moskva | - | FK Tom Tomsk | 1:0 |
Rusia