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| Clasificación | » En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Shonan Bellmare | 18 | 14 | 4 | 0 | 36:8 | 28 | 46 |
| 2 |
|
Oita Trinita | 18 | 12 | 2 | 4 | 26:17 | 9 | 38 |
| 3 |
|
Júbilo Iwata | 19 | 10 | 5 | 4 | 36:23 | 13 | 35 |
| 4 |
|
JEF United Chiba | 18 | 10 | 4 | 4 | 23:16 | 7 | 34 |
| 5 |
|
Matsumoto Yamaga | 18 | 9 | 5 | 4 | 24:18 | 6 | 32 |
| 6 |
|
Giravanz Kitakyushu | 18 | 9 | 4 | 5 | 25:24 | 1 | 31 |
| 7 |
|
Montedio Yamagata | 18 | 9 | 3 | 6 | 28:17 | 11 | 30 |
| 8 |
|
Consadole Sapporo | 18 | 8 | 6 | 4 | 25:16 | 9 | 30 |
| 9 |
|
Fagiano Okayama | 18 | 6 | 10 | 2 | 20:16 | 4 | 28 |
| 10 |
|
Kyoto Sanga FC | 18 | 5 | 11 | 2 | 27:22 | 5 | 26 |
| 11 |
|
FC Gifu | 18 | 7 | 5 | 6 | 31:29 | 2 | 26 |
| 12 |
|
Ehime FC | 19 | 7 | 4 | 8 | 27:22 | 5 | 25 |
| 13 |
|
Thespakusatsu Gunma | 18 | 7 | 4 | 7 | 22:21 | 1 | 25 |
| 14 |
|
Yokohama FC | 18 | 6 | 6 | 6 | 21:18 | 3 | 24 |
| 15 |
|
V-Varen Nagasaki | 18 | 5 | 9 | 4 | 15:16 | -1 | 24 |
| 16 |
|
Tochigi SC | 18 | 6 | 5 | 7 | 25:25 | 0 | 23 |
| 17 |
|
Avispa Fukuoka | 17 | 7 | 2 | 8 | 18:19 | -1 | 23 |
| 18 |
|
Mito HollyHock | 18 | 5 | 6 | 7 | 23:19 | 4 | 21 |
| 19 |
|
Roasso Kumamoto | 18 | 5 | 6 | 7 | 18:23 | -5 | 21 |
| 20 |
|
Tokyo Verdy | 18 | 4 | 5 | 9 | 11:24 | -13 | 17 |
| 21 |
|
Kamatamare Sanuki | 17 | 4 | 4 | 9 | 12:26 | -14 | 16 |
| 22 |
|
Kataller Toyama | 18 | 2 | 5 | 11 | 12:28 | -16 | 11 |
| Ascenso | |
| Playoff | |
| Permanencia | |
| Descenso |
