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| Clasificación | » En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
V-Varen Nagasaki | 18 | 12 | 3 | 3 | 32:13 | 19 | 39 |
| 2 |
|
Ventforet Kofu | 19 | 10 | 7 | 2 | 25:16 | 9 | 37 |
| 3 |
|
Kyoto Sanga FC | 18 | 11 | 3 | 4 | 30:18 | 12 | 36 |
| 4 |
|
Giravanz Kitakyushu | 19 | 10 | 4 | 5 | 26:19 | 7 | 34 |
| 5 |
|
Tokushima Vortis | 18 | 9 | 6 | 3 | 28:10 | 18 | 33 |
| 6 |
|
Júbilo Iwata | 19 | 9 | 6 | 4 | 33:19 | 14 | 33 |
| 7 |
|
Avispa Fukuoka | 18 | 10 | 3 | 5 | 21:14 | 7 | 33 |
| 8 |
|
Montedio Yamagata | 19 | 9 | 3 | 7 | 31:20 | 11 | 30 |
| 9 |
|
Fagiano Okayama | 20 | 8 | 5 | 7 | 24:23 | 1 | 29 |
| 10 |
|
Tokyo Verdy | 18 | 6 | 7 | 5 | 22:17 | 5 | 25 |
| 11 |
|
Albirex Niigata | 19 | 6 | 7 | 6 | 24:26 | -2 | 25 |
| 12 |
|
Omiya Ardija | 18 | 6 | 7 | 5 | 15:17 | -2 | 25 |
| 13 |
|
Tochigi SC | 18 | 6 | 6 | 6 | 17:14 | 3 | 24 |
| 14 |
|
FC Machida Zelvia | 19 | 5 | 9 | 5 | 21:19 | 2 | 24 |
| 15 |
|
Zweigen Kanazawa | 20 | 6 | 6 | 8 | 26:30 | -4 | 24 |
| 16 |
|
FC Ryūkyū | 17 | 6 | 5 | 6 | 27:22 | 5 | 23 |
| 17 |
|
Matsumoto Yamaga | 18 | 5 | 7 | 6 | 18:24 | -6 | 22 |
| 18 |
|
Mito HollyHock | 18 | 5 | 6 | 7 | 28:29 | -1 | 21 |
| 19 |
|
Renofa Yamaguchi | 17 | 5 | 2 | 10 | 19:28 | -9 | 17 |
| 20 |
|
JEF United Chiba | 19 | 4 | 4 | 11 | 19:30 | -11 | 16 |
| 21 |
|
Ehime FC | 19 | 3 | 4 | 12 | 14:29 | -15 | 13 |
| 22 |
|
Thespakusatsu Gunma | 19 | 4 | 1 | 14 | 14:36 | -22 | 13 |
| Ascenso |
