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| Clasificación | » En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
V-Varen Nagasaki | 19 | 13 | 3 | 3 | 33:13 | 20 | 42 |
| 2 |
|
Kyoto Sanga FC | 19 | 12 | 3 | 4 | 32:19 | 13 | 39 |
| 3 |
|
Tokushima Vortis | 20 | 10 | 7 | 3 | 32:11 | 21 | 37 |
| 4 |
|
Giravanz Kitakyushu | 20 | 11 | 4 | 5 | 28:19 | 9 | 37 |
| 5 |
|
Avispa Fukuoka | 20 | 11 | 4 | 5 | 25:16 | 9 | 37 |
| 6 |
|
Ventforet Kofu | 20 | 10 | 7 | 3 | 25:17 | 8 | 37 |
| 7 |
|
Júbilo Iwata | 20 | 10 | 6 | 4 | 35:19 | 16 | 36 |
| 8 |
|
Montedio Yamagata | 21 | 11 | 3 | 7 | 36:22 | 14 | 36 |
| 9 |
|
FC Machida Zelvia | 21 | 7 | 9 | 5 | 23:19 | 4 | 30 |
| 10 |
|
Fagiano Okayama | 21 | 8 | 6 | 7 | 25:24 | 1 | 30 |
| 11 |
|
Omiya Ardija | 20 | 7 | 8 | 5 | 21:21 | 0 | 29 |
| 12 |
|
FC Ryūkyū | 20 | 7 | 6 | 7 | 34:25 | 9 | 27 |
| 13 |
|
Mito HollyHock | 20 | 7 | 6 | 7 | 31:30 | 1 | 27 |
| 14 |
|
Tokyo Verdy | 20 | 6 | 8 | 6 | 23:20 | 3 | 26 |
| 15 |
|
Albirex Niigata | 21 | 6 | 8 | 7 | 27:30 | -3 | 26 |
| 16 |
|
Tochigi SC | 19 | 6 | 7 | 6 | 19:16 | 3 | 25 |
| 17 |
|
Zweigen Kanazawa | 21 | 6 | 7 | 8 | 27:31 | -4 | 25 |
| 18 |
|
Matsumoto Yamaga | 19 | 6 | 7 | 6 | 21:25 | -4 | 25 |
| 19 |
|
Renofa Yamaguchi | 19 | 6 | 2 | 11 | 23:31 | -8 | 20 |
| 20 |
|
JEF United Chiba | 20 | 5 | 4 | 11 | 20:30 | -10 | 19 |
| 21 |
|
Thespakusatsu Gunma | 20 | 5 | 1 | 14 | 15:36 | -21 | 16 |
| 22 |
|
Ehime FC | 20 | 3 | 4 | 13 | 14:30 | -16 | 13 |
| Ascenso |
