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| 13.05.1999 | 17:30 | FK Nevėžis | - | FK Žalgiris B | 0:0 | |
| 17:30 | Kauno Jegeriai | - | FK Ekranas | 1:2 | ||
| 17:30 | FK Kareda Siauliai | - | FBK Kaunas | 2:0 | ||
| 17:30 | FK Dainava Alytus | - | FK Atlantas | 2:1 | ||
| 17:30 | FK Banga Gargždai | - | Lokomotyvas Kaunas | 2:0 | ||
| 17:30 | FK Zalgiris | - | Inkaras Kaunas | 1:1 |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Kareda Siauliai | 19 | 16 | 3 | 0 | 61:7 | 54 | 51 |
| 2 |
|
FK Zalgiris | 19 | 14 | 5 | 0 | 61:8 | 53 | 49 |
| 3 |
|
FBK Kaunas | 19 | 15 | 3 | 1 | 47:11 | 36 | 48 |
| 4 |
|
FK Ekranas | 19 | 10 | 4 | 5 | 39:18 | 21 | 33 |
| 5 |
|
Inkaras Kaunas | 19 | 8 | 4 | 7 | 27:22 | 5 | 28 |
| 6 |
|
FK Dainava Alytus | 19 | 8 | 1 | 10 | 22:42 | -20 | 25 |
| 7 |
|
FK Atlantas | 19 | 6 | 3 | 10 | 25:29 | -4 | 21 |
| 8 |
|
FK Banga Gargždai | 19 | 5 | 5 | 9 | 15:25 | -10 | 20 |
| 9 |
|
FK Nevėžis | 19 | 5 | 4 | 10 | 14:30 | -16 | 19 |
| 10 |
|
Kauno Jegeriai | 19 | 5 | 2 | 12 | 17:42 | -25 | 17 |
| 11 |
|
FK Žalgiris B | 19 | 5 | 2 | 12 | 18:51 | -33 | 17 |
| 12 |
|
Lokomotyvas Kaunas | 19 | 4 | 0 | 15 | 10:35 | -25 | 12 |
| 13 |
|
Mastis Telšiai | 12 | 1 | 0 | 11 | 4:40 | -36 | 3 |
| 14 |
|
FK Panerys | 0 | 0 | 0 | 0 | 0:0 | 0 | 0 |
