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| 17.09.2016 | 08:00 | SKA-Khabarovsk | - | Baltika Kaliningrad | 1:0 (0:0) | |
| 10:00 | Sibir Novosibirsk | - | Enisey Krasnoyarsk | 1:1 (0:0) | ||
| 11:00 | Luch-Energiya Vladivostok | - | FK Neftekhimik | 1:0 (1:0) | ||
| 14:00 | FK Tambov | - | Zenit 2 | 0:0 (0:0) | ||
| 15:00 | Spartak Moskva 2 | - | Spartak Nalchik | 0:0 (0:0) | ||
| 15:00 | FK Tosno | - | Volgar Astrakhan | 3:0 (1:0) | ||
| 16:00 | Mordovia Saransk | - | FK Tyumen | 1:1 (1:0) | ||
| 17:00 | Fakel Voronezh | - | Sokol Saratov | 1:2 (0:2) | ||
| 18:00 | Kuban Krasnodar (1928-2018) | - | Shinnik Yaroslavl | 0:1 (0:1) | ||
| 12.10.2016 | 17:30 | FK Khimki | - | Dinamo Moskva | 0:0 (0:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Dinamo Moskva | 13 | 9 | 3 | 1 | 25:10 | 15 | 30 |
| 2 |
|
FK Tosno | 13 | 8 | 4 | 1 | 21:9 | 12 | 28 |
| 3 |
|
Shinnik Yaroslavl | 13 | 6 | 4 | 3 | 15:8 | 7 | 22 |
| 4 |
|
Spartak Moskva 2 | 13 | 6 | 4 | 3 | 21:15 | 6 | 22 |
| 5 |
|
Fakel Voronezh | 13 | 6 | 4 | 3 | 18:12 | 6 | 22 |
| 6 |
|
Zenit 2 | 13 | 5 | 6 | 2 | 15:12 | 3 | 21 |
| 7 |
|
SKA-Khabarovsk | 13 | 5 | 5 | 3 | 16:14 | 2 | 20 |
| 8 |
|
Volgar Astrakhan | 13 | 6 | 2 | 5 | 16:18 | -2 | 20 |
| 9 |
|
Enisey Krasnoyarsk | 13 | 5 | 3 | 5 | 11:13 | -2 | 18 |
| 10 |
|
Spartak Nalchik | 13 | 3 | 6 | 4 | 9:10 | -1 | 15 |
| 11 |
|
FK Tyumen | 13 | 4 | 3 | 6 | 14:18 | -4 | 15 |
| 12 |
|
FK Tambov | 13 | 3 | 5 | 5 | 11:14 | -3 | 14 |
| 13 |
|
Sibir Novosibirsk | 13 | 2 | 8 | 3 | 11:13 | -2 | 14 |
| 14 |
|
Sokol Saratov | 13 | 2 | 7 | 4 | 12:14 | -2 | 13 |
| 15 |
|
Kuban Krasnodar (1928-2018) | 13 | 2 | 7 | 4 | 11:13 | -2 | 13 |
| 16 |
|
Mordovia Saransk | 13 | 3 | 3 | 7 | 12:13 | -1 | 12 |
| 17 |
|
FK Khimki | 13 | 2 | 6 | 5 | 10:19 | -9 | 12 |
|
FK Neftekhimik | 13 | 3 | 3 | 7 | 10:19 | -9 | 12 | |
| 19 |
|
Luch-Energiya Vladivostok | 13 | 3 | 3 | 7 | 10:17 | -7 | 12 |
| 20 |
|
Baltika Kaliningrad | 13 | 2 | 4 | 7 | 8:15 | -7 | 10 |
| Ascenso | |
| Playoff | |
| Descenso |
