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| 01.10.2016 | 16:00 | Kuban Krasnodar (1928-2018) | - | Enisey Krasnoyarsk | 2:1 (1:1) | |
| 02.10.2016 | 08:00 | SKA-Khabarovsk | - | Volgar Astrakhan | 2:1 (1:1) | |
| 11:00 | Sibir Novosibirsk | - | Baltika Kaliningrad | 1:1 (0:1) | ||
| 13:00 | Spartak Moskva 2 | - | FK Neftekhimik | 0:0 (0:0) | ||
| 13:00 | FK Tambov | - | Spartak Nalchik | 0:0 (0:0) | ||
| 13:00 | FK Khimki | - | Zenit 2 | 2:1 (1:0) | ||
| 15:00 | FK Tosno | - | Luch-Energiya Vladivostok | 1:2 (0:2) | ||
| 15:00 | Fakel Voronezh | - | FK Tyumen | 0:0 (0:0) | ||
| 15:00 | Sokol Saratov | - | Shinnik Yaroslavl | 2:2 (2:2) | ||
| 16:00 | Mordovia Saransk | - | Dinamo Moskva | 0:1 (0:1) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Dinamo Moskva | 15 | 11 | 3 | 1 | 27:10 | 17 | 36 |
| 2 |
|
FK Tosno | 15 | 8 | 5 | 2 | 23:12 | 11 | 29 |
| 3 |
|
Fakel Voronezh | 15 | 7 | 5 | 3 | 20:12 | 8 | 26 |
| 4 |
|
Spartak Moskva 2 | 15 | 6 | 6 | 3 | 21:15 | 6 | 24 |
| 5 |
|
SKA-Khabarovsk | 15 | 6 | 6 | 3 | 19:16 | 3 | 24 |
| 6 |
|
Shinnik Yaroslavl | 15 | 6 | 5 | 4 | 17:12 | 5 | 23 |
| 7 |
|
Zenit 2 | 15 | 5 | 7 | 3 | 17:15 | 2 | 22 |
| 8 |
|
Enisey Krasnoyarsk | 15 | 6 | 3 | 6 | 16:15 | 1 | 21 |
| 9 |
|
Volgar Astrakhan | 15 | 6 | 2 | 7 | 18:22 | -4 | 20 |
| 10 |
|
FK Tyumen | 15 | 5 | 4 | 6 | 16:18 | -2 | 19 |
| 11 |
|
FK Tambov | 15 | 4 | 6 | 5 | 13:15 | -2 | 18 |
| 12 |
|
Spartak Nalchik | 15 | 3 | 8 | 4 | 10:11 | -1 | 17 |
| 13 |
|
Kuban Krasnodar (1928-2018) | 15 | 3 | 7 | 5 | 13:16 | -3 | 16 |
| 14 |
|
FK Khimki | 15 | 3 | 7 | 5 | 12:20 | -8 | 16 |
| 15 |
|
Luch-Energiya Vladivostok | 15 | 4 | 4 | 7 | 12:18 | -6 | 16 |
| 16 |
|
Sokol Saratov | 15 | 2 | 9 | 4 | 16:18 | -2 | 15 |
| 17 |
|
Sibir Novosibirsk | 15 | 2 | 9 | 4 | 12:15 | -3 | 15 |
| 18 |
|
FK Neftekhimik | 15 | 3 | 5 | 7 | 12:21 | -9 | 14 |
| 19 |
|
Mordovia Saransk | 15 | 3 | 3 | 9 | 12:18 | -6 | 12 |
| 20 |
|
Baltika Kaliningrad | 15 | 2 | 6 | 7 | 9:16 | -7 | 12 |
| Ascenso | |
| Playoff | |
| Descenso |
