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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | » 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Mainz | 28 | 11 | 13 | 4 | 23:13 | 10 | 46 |
| 2 |
|
1. FC Nürnberg | 28 | 12 | 10 | 6 | 24:18 | 6 | 46 |
| 3 |
|
Erzgebirge Aue | 28 | 12 | 10 | 6 | 18:12 | 6 | 46 |
| 4 |
|
Energie Cottbus | 28 | 11 | 9 | 8 | 24:20 | 4 | 42 |
| 5 |
|
MSV Duisburg | 28 | 10 | 10 | 8 | 23:19 | 4 | 40 |
| 6 |
|
SpVgg Unterhaching | 28 | 9 | 11 | 8 | 17:19 | -2 | 38 |
| 7 |
|
Karlsruher SC | 28 | 8 | 13 | 7 | 21:19 | 2 | 37 |
|
SpVgg Greuther Fürth | 28 | 8 | 13 | 7 | 21:19 | 2 | 37 | |
| 9 |
|
Arminia Bielefeld | 28 | 8 | 13 | 7 | 18:17 | 1 | 37 |
| 10 |
|
VfB Lübeck | 28 | 8 | 12 | 8 | 23:24 | -1 | 36 |
| 11 |
|
Alemannia Aachen | 28 | 9 | 9 | 10 | 19:22 | -3 | 36 |
| 12 |
|
LR Ahlen | 28 | 8 | 11 | 9 | 21:20 | 1 | 35 |
| 13 |
|
Rot-Weiß Oberhausen | 28 | 9 | 8 | 11 | 20:25 | -5 | 35 |
| 14 |
|
Eintracht Trier | 28 | 9 | 6 | 13 | 22:23 | -1 | 33 |
| 15 |
|
1. FC Union Berlin | 28 | 8 | 9 | 11 | 16:20 | -4 | 33 |
| 16 |
|
Wacker Burghausen | 28 | 7 | 10 | 11 | 15:20 | -5 | 31 |
| 17 |
|
Jahn Regensburg | 28 | 7 | 9 | 12 | 15:24 | -9 | 30 |
| 18 |
|
VfL Osnabrück | 28 | 6 | 8 | 14 | 14:20 | -6 | 26 |
