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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | » 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Erzgebirge Aue | 21 | 9 | 8 | 4 | 10:5 | 5 | 35 |
| 2 |
|
Hansa Rostock | 21 | 9 | 7 | 5 | 14:13 | 1 | 34 |
| 3 |
|
SpVgg Greuther Fürth | 21 | 9 | 6 | 6 | 17:13 | 4 | 33 |
| 4 |
|
VfL Bochum | 21 | 7 | 11 | 3 | 15:8 | 7 | 32 |
| 5 |
|
SpVgg Unterhaching | 21 | 8 | 8 | 5 | 16:11 | 5 | 32 |
| 6 |
|
Karlsruher SC | 21 | 7 | 9 | 5 | 13:9 | 4 | 30 |
| 7 |
|
SC Paderborn 07 | 21 | 7 | 8 | 6 | 17:9 | 8 | 29 |
| 8 |
|
Alemannia Aachen | 21 | 7 | 8 | 6 | 16:12 | 4 | 29 |
| 9 |
|
Eintracht Braunschweig | 21 | 6 | 11 | 4 | 11:9 | 2 | 29 |
| 10 |
|
TSV 1860 München | 21 | 6 | 9 | 6 | 14:11 | 3 | 27 |
| 11 |
|
SC Freiburg | 21 | 5 | 11 | 5 | 9:10 | -1 | 26 |
| 12 |
|
Energie Cottbus | 21 | 4 | 13 | 4 | 10:9 | 1 | 25 |
| 13 |
|
LR Ahlen | 21 | 5 | 8 | 8 | 11:18 | -7 | 23 |
| 14 |
|
Dynamo Dresden | 21 | 3 | 12 | 6 | 12:15 | -3 | 21 |
| 15 |
|
1. FC Saarbrücken | 21 | 4 | 9 | 8 | 10:16 | -6 | 21 |
| 16 |
|
Sportfreunde Siegen | 21 | 4 | 9 | 8 | 8:15 | -7 | 21 |
| 17 |
|
Wacker Burghausen | 21 | 3 | 11 | 7 | 12:18 | -6 | 20 |
| 18 |
|
Kickers Offenbach | 21 | 3 | 8 | 10 | 6:20 | -14 | 17 |
