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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | » 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Erzgebirge Aue | 27 | 11 | 10 | 6 | 17:9 | 8 | 43 |
| 2 |
|
VfL Bochum | 27 | 9 | 15 | 3 | 18:8 | 10 | 42 |
| 3 |
|
Hansa Rostock | 27 | 11 | 9 | 7 | 17:19 | -2 | 42 |
| 4 |
|
SpVgg Unterhaching | 27 | 10 | 10 | 7 | 21:15 | 6 | 40 |
| 5 |
|
Alemannia Aachen | 27 | 9 | 12 | 6 | 20:13 | 7 | 39 |
| 6 |
|
Karlsruher SC | 27 | 9 | 12 | 6 | 16:12 | 4 | 39 |
| 7 |
|
TSV 1860 München | 27 | 8 | 13 | 6 | 19:14 | 5 | 37 |
| 8 |
|
SpVgg Greuther Fürth | 27 | 9 | 10 | 8 | 19:19 | 0 | 37 |
| 9 |
|
SC Paderborn 07 | 27 | 8 | 10 | 9 | 20:13 | 7 | 34 |
| 10 |
|
Eintracht Braunschweig | 27 | 7 | 13 | 7 | 15:15 | 0 | 34 |
| 11 |
|
SC Freiburg | 27 | 6 | 15 | 6 | 11:12 | -1 | 33 |
| 12 |
|
Wacker Burghausen | 27 | 6 | 13 | 8 | 19:22 | -3 | 31 |
| 13 |
|
1. FC Saarbrücken | 27 | 7 | 10 | 10 | 16:22 | -6 | 31 |
| 14 |
|
Dynamo Dresden | 27 | 5 | 15 | 7 | 15:17 | -2 | 30 |
| 15 |
|
Energie Cottbus | 27 | 5 | 15 | 7 | 11:13 | -2 | 30 |
| 16 |
|
LR Ahlen | 27 | 6 | 11 | 10 | 15:22 | -7 | 29 |
| 17 |
|
Sportfreunde Siegen | 27 | 5 | 11 | 11 | 10:20 | -10 | 26 |
| 18 |
|
Kickers Offenbach | 27 | 4 | 12 | 11 | 7:21 | -14 | 24 |
