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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | » 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 29 | 19 | 4 | 6 | 40:14 | 26 | 61 |
| 2 |
|
Fortuna Düsseldorf | 29 | 16 | 9 | 4 | 36:14 | 22 | 57 |
| 3 |
|
Eintracht Frankfurt | 29 | 14 | 10 | 5 | 36:17 | 19 | 52 |
| 4 |
|
SC Paderborn 07 | 29 | 14 | 9 | 6 | 29:19 | 10 | 51 |
| 5 |
|
FC St. Pauli | 29 | 15 | 6 | 8 | 26:17 | 9 | 51 |
| 6 |
|
TSV 1860 München | 29 | 13 | 7 | 9 | 28:21 | 7 | 46 |
| 7 |
|
MSV Duisburg | 29 | 9 | 11 | 9 | 20:23 | -3 | 38 |
| 8 |
|
Ingolstadt | 29 | 9 | 11 | 9 | 23:28 | -5 | 38 |
| 9 |
|
Dynamo Dresden | 29 | 9 | 10 | 10 | 25:30 | -5 | 37 |
| 10 |
|
Erzgebirge Aue | 29 | 8 | 11 | 10 | 16:19 | -3 | 35 |
| 11 |
|
1. FC Union Berlin | 29 | 9 | 8 | 12 | 26:30 | -4 | 35 |
| 12 |
|
Eintracht Braunschweig | 29 | 6 | 16 | 7 | 13:15 | -2 | 34 |
| 13 |
|
FSV Frankfurt | 29 | 8 | 8 | 13 | 17:29 | -12 | 32 |
| 14 |
|
Karlsruher SC | 29 | 8 | 7 | 14 | 15:25 | -10 | 31 |
| 15 |
|
Energie Cottbus | 29 | 7 | 8 | 14 | 16:24 | -8 | 29 |
| 16 |
|
Hansa Rostock | 29 | 4 | 13 | 12 | 17:30 | -13 | 25 |
| 17 |
|
VfL Bochum | 29 | 4 | 12 | 13 | 16:28 | -12 | 24 |
| 18 |
|
Alemannia Aachen | 29 | 2 | 14 | 13 | 10:26 | -16 | 20 |
| Ascenso | |
| Permanencia | |
| Permanencia | |
| Descenso |
