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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | » 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 33 | 20 | 6 | 7 | 42:16 | 26 | 66 |
| 2 |
|
Fortuna Düsseldorf | 33 | 18 | 10 | 5 | 38:15 | 23 | 64 |
| 3 |
|
Eintracht Frankfurt | 33 | 16 | 12 | 5 | 41:18 | 23 | 60 |
| 4 |
|
FC St. Pauli | 33 | 17 | 7 | 9 | 31:19 | 12 | 58 |
| 5 |
|
SC Paderborn 07 | 33 | 16 | 10 | 7 | 32:21 | 11 | 58 |
| 6 |
|
TSV 1860 München | 33 | 16 | 8 | 9 | 35:23 | 12 | 56 |
| 7 |
|
Dynamo Dresden | 33 | 11 | 11 | 11 | 27:32 | -5 | 44 |
| 8 |
|
Ingolstadt | 33 | 10 | 13 | 10 | 26:33 | -7 | 43 |
| 9 |
|
MSV Duisburg | 33 | 10 | 12 | 11 | 23:26 | -3 | 42 |
| 10 |
|
1. FC Union Berlin | 33 | 10 | 10 | 13 | 28:33 | -5 | 40 |
| 11 |
|
Erzgebirge Aue | 33 | 9 | 12 | 12 | 17:22 | -5 | 39 |
| 12 |
|
Karlsruher SC | 33 | 10 | 9 | 14 | 19:26 | -7 | 39 |
| 13 |
|
Eintracht Braunschweig | 33 | 6 | 19 | 8 | 13:16 | -3 | 37 |
| 14 |
|
FSV Frankfurt | 33 | 9 | 8 | 16 | 21:32 | -11 | 35 |
| 15 |
|
VfL Bochum | 33 | 6 | 13 | 14 | 19:30 | -11 | 31 |
| 16 |
|
Energie Cottbus | 33 | 7 | 9 | 17 | 17:28 | -11 | 30 |
| 17 |
|
Hansa Rostock | 33 | 5 | 13 | 15 | 19:38 | -19 | 28 |
| 18 |
|
Alemannia Aachen | 33 | 2 | 16 | 15 | 10:30 | -20 | 22 |
| Ascenso | |
| Permanencia | |
| Permanencia | |
| Descenso |
