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| Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | » 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Erzgebirge Aue | 33 | 14 | 13 | 6 | 22:9 | 13 | 55 |
| 2 |
|
VfL Bochum | 33 | 11 | 17 | 5 | 22:11 | 11 | 50 |
| 3 |
|
Hansa Rostock | 33 | 13 | 10 | 10 | 22:24 | -2 | 49 |
| 4 |
|
Alemannia Aachen | 33 | 12 | 12 | 9 | 25:18 | 7 | 48 |
| 5 |
|
SpVgg Greuther Fürth | 33 | 12 | 12 | 9 | 26:22 | 4 | 48 |
| 6 |
|
TSV 1860 München | 33 | 10 | 15 | 8 | 22:17 | 5 | 45 |
| 7 |
|
Karlsruher SC | 33 | 10 | 14 | 9 | 22:19 | 3 | 44 |
| 8 |
|
SC Paderborn 07 | 33 | 11 | 10 | 12 | 26:18 | 8 | 43 |
| 9 |
|
Dynamo Dresden | 33 | 9 | 16 | 8 | 21:20 | 1 | 43 |
| 10 |
|
SC Freiburg | 33 | 9 | 16 | 8 | 15:16 | -1 | 43 |
| 11 |
|
SpVgg Unterhaching | 33 | 10 | 11 | 12 | 22:22 | 0 | 41 |
| 12 |
|
Eintracht Braunschweig | 33 | 9 | 14 | 10 | 18:22 | -4 | 41 |
| 13 |
|
Kickers Offenbach | 33 | 9 | 13 | 11 | 15:22 | -7 | 40 |
| 14 |
|
Wacker Burghausen | 33 | 8 | 15 | 10 | 22:27 | -5 | 39 |
| 15 |
|
Energie Cottbus | 33 | 7 | 17 | 9 | 14:15 | -1 | 38 |
| 16 |
|
1. FC Saarbrücken | 33 | 8 | 11 | 14 | 17:29 | -12 | 35 |
| 17 |
|
LR Ahlen | 33 | 6 | 16 | 11 | 16:25 | -9 | 34 |
| 18 |
|
Sportfreunde Siegen | 33 | 7 | 12 | 14 | 14:25 | -11 | 33 |
