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| 17.04.2009 | 18:00 | Augsburgo | - | VfL Osnabrück | 3:0 (2:0) | |
| 18:00 | Mainz | - | Rot Weiss Ahlen | 0:0 (0:0) | ||
| 18:00 | Hansa Rostock | - | Rot-Weiß Oberhausen | 3:1 (2:1) | ||
| 19.04.2009 | 14:00 | SV Wehen Wiesbaden | - | SpVgg Greuther Fürth | 0:1 (0:1) | |
| 14:00 | 1. FC Nürnberg | - | FC St. Pauli | 2:0 (1:0) | ||
| 14:00 | MSV Duisburg | - | TuS Koblenz | 2:3 (1:1) | ||
| 14:00 | Alemannia Aachen | - | FSV Frankfurt | 2:0 (0:0) | ||
| 14:00 | SC Freiburg | - | Ingolstadt | 3:2 (2:0) | ||
| 20.04.2009 | 20:15 | TSV 1860 München | - | 1. FC Kaiserslautern | 1:1 (1:1) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 28 | 17 | 4 | 7 | 45:28 | 17 | 55 |
| 2 |
|
1. FC Nürnberg | 28 | 13 | 10 | 5 | 44:25 | 19 | 49 |
| 3 |
|
Mainz | 28 | 13 | 9 | 6 | 48:31 | 17 | 48 |
| 4 |
|
SpVgg Greuther Fürth | 28 | 14 | 6 | 8 | 53:38 | 15 | 48 |
| 5 |
|
1. FC Kaiserslautern | 28 | 13 | 7 | 8 | 44:33 | 11 | 46 |
| 6 |
|
Alemannia Aachen | 28 | 13 | 6 | 9 | 47:33 | 14 | 45 |
| 7 |
|
MSV Duisburg | 28 | 10 | 11 | 7 | 42:31 | 11 | 41 |
| 8 |
|
FC St. Pauli | 28 | 11 | 6 | 11 | 45:54 | -9 | 39 |
| 9 |
|
Rot-Weiß Oberhausen | 28 | 10 | 6 | 12 | 30:45 | -15 | 36 |
| 10 |
|
TSV 1860 München | 28 | 9 | 8 | 11 | 38:36 | 2 | 35 |
| 11 |
|
Augsburgo | 28 | 9 | 8 | 11 | 35:35 | 0 | 35 |
| 12 |
|
TuS Koblenz | 28 | 10 | 7 | 11 | 42:42 | 0 | 34 |
| 13 |
|
FSV Frankfurt | 28 | 8 | 9 | 11 | 29:37 | -8 | 33 |
| 14 |
|
Rot Weiss Ahlen | 28 | 9 | 6 | 13 | 30:48 | -18 | 33 |
| 15 |
|
Hansa Rostock | 28 | 7 | 9 | 12 | 40:45 | -5 | 30 |
| 16 |
|
VfL Osnabrück | 28 | 6 | 10 | 12 | 35:51 | -16 | 28 |
| 17 |
|
Ingolstadt | 28 | 6 | 9 | 13 | 30:45 | -15 | 27 |
| 18 |
|
SV Wehen Wiesbaden | 28 | 4 | 9 | 15 | 25:45 | -20 | 21 |
| Ascenso | |
| Permanencia | |
| Permanencia | |
| Descenso |
