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| 04.05.2007 | 19:30 | Rot Weiss Ahlen | - | Hamburgo II | 1:2 (0:0) | |
| 05.05.2007 | 14:00 | Rot-Weiß Erfurt | - | Bayer Leverkusen II | 3:2 (3:1) | |
| 14:00 | Dynamo Dresden | - | SV Wilhelmshaven | 3:1 (2:0) | ||
| 14:00 | 1. FC Magdeburg | - | 1. FC Union Berlin | 3:1 (0:0) | ||
| 14:00 | Wuppertaler SV | - | Hertha II | 1:3 (0:1) | ||
| 14:00 | Fortuna Düsseldorf | - | Kickers Emden | 1:1 (0:0) | ||
| 14:00 | VfL Osnabrück | - | FC St. Pauli | 0:0 (0:0) | ||
| 06.05.2007 | 14:00 | Borussia Dortmund II | - | Werder Bremen II | 1:0 (0:0) | |
| 14:00 | Bor. Mönchengladbach II | - | Holstein Kiel | 6:1 (2:1) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC St. Pauli | 32 | 15 | 10 | 7 | 44:29 | 15 | 55 |
| 2 |
|
1. FC Magdeburg | 32 | 15 | 10 | 7 | 46:35 | 11 | 55 |
| 3 |
|
VfL Osnabrück | 32 | 14 | 10 | 8 | 48:36 | 12 | 52 |
| 4 |
|
Dynamo Dresden | 32 | 15 | 6 | 11 | 45:36 | 9 | 51 |
| 5 |
|
Kickers Emden | 32 | 13 | 11 | 8 | 41:34 | 7 | 50 |
| 6 |
|
Hamburgo II | 32 | 13 | 10 | 9 | 46:39 | 7 | 49 |
| 7 |
|
Rot-Weiß Erfurt | 32 | 13 | 10 | 9 | 41:39 | 2 | 49 |
| 8 |
|
Wuppertaler SV | 32 | 13 | 9 | 10 | 46:43 | 3 | 48 |
| 9 |
|
Rot Weiss Ahlen | 33 | 13 | 9 | 11 | 46:45 | 1 | 48 |
| 10 |
|
1. FC Union Berlin | 32 | 13 | 7 | 12 | 41:31 | 10 | 46 |
| 11 |
|
Fortuna Düsseldorf | 32 | 11 | 12 | 9 | 43:40 | 3 | 45 |
| 12 |
|
VfB Lübeck | 32 | 13 | 5 | 14 | 42:40 | 2 | 44 |
| 13 |
|
Werder Bremen II | 33 | 12 | 7 | 14 | 47:45 | 2 | 43 |
| 14 |
|
Holstein Kiel | 32 | 10 | 9 | 13 | 35:48 | -13 | 39 |
| 15 |
|
Borussia Dortmund II | 32 | 11 | 5 | 16 | 34:46 | -12 | 38 |
| 16 |
|
Bor. Mönchengladbach II | 33 | 8 | 8 | 17 | 41:54 | -13 | 32 |
| 17 |
|
Hertha II | 33 | 8 | 8 | 17 | 31:47 | -16 | 32 |
| 18 |
|
Bayer Leverkusen II | 32 | 7 | 9 | 16 | 36:50 | -14 | 30 |
| 19 |
|
SV Wilhelmshaven | 32 | 7 | 9 | 16 | 38:54 | -16 | 30 |
