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| 17.04.1999 | 15:30 | Wuppertaler SV | - | 1. FC Saarbrücken | 3:1 (2:1) | |
| 18.04.1999 | 15:00 | LR Ahlen | - | Borussia Dortmund II | 2:0 (1:0) | |
| 15:00 | Bayer Leverkusen II | - | Alemannia Aachen | 1:3 (1:1) | ||
| 15:00 | SC Verl | - | FC Remscheid | 1:0 (0:0) | ||
| 15:00 | SV 07 Elversberg | - | Sportfreunde Siegen | 3:0 (1:0) | ||
| 15:00 | FC 08 Homburg | - | FSV Salmrohr | 2:0 (0:0) | ||
| 15:00 | SpVgg Erkenschwick | - | 1. FC Kaiserslautern II | 1:5 (1:2) | ||
| 18:00 | Preußen Münster | - | SC Paderborn 07 | 1:1 (1:1) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Saarbrücken | 27 | 14 | 7 | 6 | 45:28 | 17 | 49 |
| 2 |
|
Alemannia Aachen | 26 | 15 | 4 | 7 | 46:33 | 13 | 49 |
| 3 |
|
SC Paderborn 07 | 26 | 14 | 6 | 6 | 48:26 | 22 | 48 |
| 4 |
|
Sportfreunde Siegen | 26 | 13 | 7 | 6 | 39:18 | 21 | 46 |
| 5 |
|
SC Verl | 27 | 13 | 7 | 7 | 51:42 | 9 | 46 |
| 6 |
|
Preußen Münster | 26 | 12 | 9 | 5 | 46:27 | 19 | 45 |
| 7 |
|
Eintracht Trier | 26 | 13 | 6 | 7 | 45:31 | 14 | 45 |
| 8 |
|
Wuppertaler SV | 26 | 13 | 4 | 9 | 47:43 | 4 | 43 |
| 9 |
|
LR Ahlen | 26 | 11 | 8 | 7 | 45:34 | 11 | 41 |
| 10 |
|
Bayer Leverkusen II | 27 | 10 | 8 | 9 | 46:42 | 4 | 38 |
| 11 |
|
1. FC Kaiserslautern II | 27 | 8 | 11 | 8 | 50:43 | 7 | 35 |
| 12 |
|
FC 08 Homburg | 27 | 8 | 8 | 11 | 26:40 | -14 | 32 |
| 13 |
|
SV 07 Elversberg | 26 | 6 | 11 | 9 | 24:33 | -9 | 29 |
| 14 |
|
Borussia Dortmund II | 27 | 6 | 8 | 13 | 39:49 | -10 | 26 |
| 15 |
|
FSV Salmrohr | 26 | 5 | 5 | 16 | 24:46 | -22 | 20 |
| 16 |
|
SpVgg Erkenschwick | 26 | 2 | 6 | 18 | 27:66 | -39 | 12 |
| 17 |
|
FC Remscheid | 26 | 2 | 3 | 21 | 17:64 | -47 | 9 |
