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| 08.02.2013 | 18:30 | SV Wehen Wiesbaden | - | Chemnitzer FC | 0:0 (0:0) | |
| 19:00 | Alemannia Aachen | - | Karlsruher SC | 0:4 (0:1) | ||
| 09.02.2013 | 14:00 | Hallescher FC | - | SV Babelsberg 03 | 1:0 (1:0) | |
| 14:00 | Arminia Bielefeld | - | Rot-Weiß Erfurt | 2:0 (1:0) | ||
| 14:00 | Wacker Burghausen | - | 1. FC Saarbrücken | 2:1 (1:0) | ||
| 14:00 | 1. FC Heidenheim 1846 | - | Preußen Münster | 3:1 (2:0) | ||
| 10.02.2013 | 14:00 | VfL Osnabrück | - | Stuttgarter Kickers | 3:1 (2:1) | |
| 12.03.2013 | 18:30 | Stuttgart II | - | SpVgg Unterhaching | 0:0 (0:0) | |
| 23.03.2013 | 14:00 | Hansa Rostock | - | Darmstadt | 0:0 (0:0) | |
| 17.04.2013 | 18:00 | Borussia Dortmund II | - | Kickers Offenbach | 0:0 (0:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta | 1.ª parte | 2.ª parte |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Karlsruher SC | 25 | 14 | 8 | 3 | 46:16 | 30 | 50 |
| 2 |
|
VfL Osnabrück | 25 | 15 | 5 | 5 | 42:20 | 22 | 50 |
| 3 |
|
Arminia Bielefeld | 25 | 14 | 7 | 4 | 42:24 | 18 | 49 |
| 4 |
|
Preußen Münster | 25 | 13 | 8 | 4 | 41:20 | 21 | 47 |
| 5 |
|
1. FC Heidenheim 1846 | 25 | 14 | 4 | 7 | 47:36 | 11 | 46 |
| 6 |
|
SpVgg Unterhaching | 25 | 11 | 7 | 7 | 38:33 | 5 | 40 |
| 7 |
|
Wacker Burghausen | 25 | 11 | 4 | 10 | 33:33 | 0 | 37 |
| 8 |
|
Stuttgart II | 25 | 10 | 6 | 9 | 29:28 | 1 | 36 |
| 9 |
|
Chemnitzer FC | 25 | 9 | 8 | 8 | 35:31 | 4 | 35 |
| 10 |
|
SV Wehen Wiesbaden | 25 | 5 | 15 | 5 | 29:31 | -2 | 30 |
| 11 |
|
Hansa Rostock | 25 | 8 | 6 | 11 | 24:33 | -9 | 30 |
| 12 |
|
Hallescher FC | 25 | 7 | 7 | 11 | 23:34 | -11 | 28 |
| 13 |
|
Stuttgarter Kickers | 25 | 7 | 6 | 12 | 28:29 | -1 | 27 |
| 14 |
|
SV Babelsberg 03 | 25 | 7 | 6 | 12 | 21:33 | -12 | 27 |
| 15 |
|
Kickers Offenbach | 25 | 7 | 7 | 11 | 32:34 | -2 | 26 |
| 16 |
|
1. FC Saarbrücken | 25 | 7 | 5 | 13 | 34:46 | -12 | 26 |
| 17 |
|
Rot-Weiß Erfurt | 25 | 6 | 7 | 12 | 28:43 | -15 | 25 |
| 18 |
|
Borussia Dortmund II | 25 | 4 | 10 | 11 | 24:43 | -19 | 22 |
| 19 |
|
Darmstadt | 25 | 3 | 11 | 11 | 19:34 | -15 | 20 |
| 20 |
|
Alemannia Aachen | 25 | 5 | 9 | 11 | 23:37 | -14 | 19 |
| Ascenso | |
| Permanencia | |
| Descenso | |
| Descenso |
