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| I | PAOK Saloniki | - | AFC Ajax | 0:2 (0:1) | ||
| V | AFC Ajax | - | PAOK Saloniki | 2:1 (0:0) | ||
| I: 02.11.2016 14:00 | V: 22.11.2016 19:00 | Campeones: AFC Ajax | ||||
| I | FC Viitorul Constanța | - | FC Zürich | 5:0 (2:0) | ||
| V | FC Zürich | - | FC Viitorul Constanța | 2:0 (2:0) | ||
| I: 02.11.2016 17:00 | V: 23.11.2016 17:00 | Campeones: FC Viitorul Constanța | ||||
| I | Málaga | - | FC Midtjylland | 2:0 (0:0) | ||
| V | FC Midtjylland | - | Málaga | 4:0 (2:0) | ||
| I: 02.11.2016 18:00 | V: 23.11.2016 19:00 | Campeones: FC Midtjylland | ||||
| I | Rosenborg BK | - | FK Čukarički | 0:1 (0:0) | ||
| V | FK Čukarički | - | Rosenborg BK | 0:2 (0:0) | ||
| I: 02.11.2016 18:00 | V: 23.11.2016 18:00 | Campeones: Rosenborg BK | ||||
| I | RB Salzburg | - | FK Kairat | 8:1 (2:0) | ||
| V | FK Kairat | - | RB Salzburg | 0:1 (0:1) | ||
| I: 02.11.2016 18:00 | V: 23.11.2016 14:00 | Campeones: RB Salzburg | ||||
| I | Cork City | - | Roma | 1:3 (1:1) | ||
| V | Roma | - | Cork City | 1:0 (0:0) | ||
| I: 02.11.2016 20:00 | V: 23.11.2016 15:00 | Campeones: Roma | ||||
| I | Altınordu FK | - | AC Sparta Praha | 6:2 (3:1) | ||
| V | AC Sparta Praha | - | Altınordu FK | 3:2 (0:1) | ||
| I: 09.11.2016 14:00 | V: 30.11.2016 15:00 | Campeones: Altınordu FK | ||||
| I | Maccabi Haifa | - | Dinamo Moskva | 0:0 (0:0) | ||
| V | Dinamo Moskva | - | Maccabi Haifa | 1:1 (0:0) | ||
| I: 16.11.2016 16:00 | V: 23.11.2016 11:30 | Campeones: Maccabi Haifa | ||||
