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| I | Metalurg Skopje | - | Qarabağ FK | 0:1 (0:0) | ||
| V | Qarabağ FK | - | Metalurg Skopje | 1:0 (0:0) | ||
| I: 02.07.2013 17:45 | V: 11.07.2013 18:00 | Campeones: Qarabağ FK | ||||
| I | Sliema Wanderers | - | Khazar Lankaran | 1:1 (0:1) | ||
| V | Khazar Lankaran | - | Sliema Wanderers | 1:0 (1:0) | ||
| I: 02.07.2013 17:45 | V: 11.07.2013 17:00 | Campeones: Khazar Lankaran | ||||
| I | JK Narva Trans | - | Gefle IF | 0:3 (0:1) | ||
| V | Gefle IF | - | JK Narva Trans | 5:1 (1:0) | ||
| I: 02.07.2013 18:00 | V: 11.07.2013 17:00 | Campeones: Gefle IF | ||||
| I | Bala Town | - | FC Levadia | 1:0 (1:0) | ||
| V | FC Levadia | - | Bala Town | 3:1 (2:0) | ||
| I: 02.07.2013 20:00 | V: 11.07.2013 18:00 | Campeones: FC Levadia | ||||
| I | ÍF Fuglafjørður | - | Linfield FC | 0:2 (0:0) | ||
| V | Linfield FC | - | ÍF Fuglafjørður | 3:0 (1:0) | ||
| I: 03.07.2013 20:45 | V: 10.07.2013 20:45 | Campeones: Linfield FC | ||||
| I | Chikhura Sachkhere | - | FC Vaduz | 0:0 (0:0) | ||
| V | FC Vaduz | - | Chikhura Sachkhere | 1:1 (1:1) | ||
| I: 04.07.2013 16:00 | V: 11.07.2013 19:00 | Campeones: Chikhura Sachkhere | ||||
| I | Astaná | - | Botev Plovdiv | 0:1 (0:1) | ||
| V | Botev Plovdiv | - | Astaná | 5:0 (0:0) | ||
| I: 04.07.2013 16:00 | V: 11.07.2013 19:30 | Campeones: Botev Plovdiv | ||||
| I | FC Milsami | - | F91 Dudelange | 1:0 (1:0) | ||
| V | F91 Dudelange | - | FC Milsami | 0:0 (0:0) | ||
| I: 04.07.2013 17:00 | V: 11.07.2013 18:00 | Campeones: FC Milsami | ||||
| I | Gandzasar Kapan | - | FK Aktobe | 1:2 (0:0) | ||
| V | FK Aktobe | - | Gandzasar Kapan | 2:1 (1:1) | ||
| I: 04.07.2013 17:00 | V: 11.07.2013 18:00 | Campeones: FK Aktobe | ||||
| I | UE Santa Coloma | - | Zrinjski Mostar | 1:3 (1:0) | ||
| V | Zrinjski Mostar | - | UE Santa Coloma | 1:0 (0:0) | ||
| I: 04.07.2013 17:30 | V: 11.07.2013 18:30 | Campeones: Zrinjski Mostar | ||||
| I | FK Čelik Nikšić | - | Budapest Honvéd | 1:4 (1:2) | ||
| V | Budapest Honvéd | - | FK Čelik Nikšić | 9:0 (3:0) | ||
| I: 04.07.2013 17:30 | V: 11.07.2013 20:30 | Campeones: Budapest Honvéd | ||||
| I | FK Teteks | - | Pyunik FC | 1:1 (0:0) | ||
| V | Pyunik FC | - | FK Teteks | 1:0 (0:0) | ||
| I: 04.07.2013 17:45 | V: 11.07.2013 17:00 | Campeones: Pyunik FC | ||||
| I | Hibernians FC | - | Vojvodina | 1:4 (0:2) | ||
| V | Vojvodina | - | Hibernians FC | 3:2 (1:1) | ||
| I: 04.07.2013 18:00 | V: 11.07.2013 20:30 | Campeones: Vojvodina | ||||
| I | Inter Baku | - | IFK Mariehamn | 1:1 (1:0) | ||
| V | IFK Mariehamn | - | Inter Baku | 0:2 (0:1) | ||
| I: 04.07.2013 18:00 | V: 11.07.2013 19:00 | Campeones: Inter Baku | ||||
| I | Jeunesse Esch | - | TPS Turku | 2:0 (1:0) | ||
| V | TPS Turku | - | Jeunesse Esch | 2:1 (1:0) | ||
| I: 04.07.2013 18:00 | V: 09.07.2013 18:00 | Campeones: Jeunesse Esch | ||||
| I | FK Kruoja Pakruojis | - | Dinamo Minsk | 0:3 (0:0) | ||
| V | Dinamo Minsk | - | FK Kruoja Pakruojis | 5:0 (4:0) | ||
| I: 04.07.2013 18:00 | V: 11.07.2013 18:00 | Campeones: Dinamo Minsk | ||||
| I | FC Flora | - | FK Kukësi | 1:1 (1:0) | ||
| V | FK Kukësi | - | FC Flora | 0:0 (0:0) | ||
| I: 04.07.2013 18:30 | V: 11.07.2013 19:30 | Campeones: FK Kukësi | ||||
| I | FK Sūduva | - | FK Turnovo | 2:2 (1:2) | ||
| V | FK Turnovo | - | FK Sūduva | 5:4 (0:1, 2:2, 2:2) pn. | ||
| I: 04.07.2013 18:45 | V: 11.07.2013 17:30 | Campeones: FK Turnovo | ||||
| I | FC Tiraspol | - | Skonto FC | 0:1 (0:0) | ||
| V | Skonto FC | - | FC Tiraspol | 4:2 (0:0, 0:1, 0:1) pn. | ||
| I: 04.07.2013 19:00 | V: 11.07.2013 18:00 | Campeones: Skonto FC | ||||
| I | KF Laçi | - | FC Differdange 03 | 0:1 (0:0) | ||
| V | FC Differdange 03 | - | KF Laçi | 2:1 (0:1) | ||
| I: 04.07.2013 19:00 | V: 09.07.2013 19:30 | Campeones: FC Differdange 03 | ||||
| I | Tromsø IL | - | NK Celje | 1:2 (1:0) | ||
| V | NK Celje | - | Tromsø IL | 0:2 (0:2) | ||
| I: 04.07.2013 19:00 | V: 11.07.2013 19:00 | Campeones: Tromsø IL | ||||
| I | Torpedo Kutaisi | - | MŠK Žilina | 0:3 (0:0) | ||
| V | MŠK Žilina | - | Torpedo Kutaisi | 3:3 (2:1) | ||
| I: 04.07.2013 19:00 | V: 11.07.2013 17:30 | Campeones: MŠK Žilina | ||||
| I | Víkingur | - | Inter Turku | 1:1 (0:1) | ||
| V | Inter Turku | - | Víkingur | 0:1 (0:0) | ||
| I: 04.07.2013 20:00 | V: 11.07.2013 18:00 | Campeones: Víkingur | ||||
| I | KF Teuta Durrës | - | Dacia Chişinău | 3:1 (1:1) | ||
| V | Dacia Chişinău | - | KF Teuta Durrës | 2:0 (1:0) | ||
| I: 04.07.2013 20:00 | V: 11.07.2013 19:15 | Campeones: Dacia Chişinău | ||||
| I | Airbus UK | - | FK Ventspils | 1:1 (0:0) | ||
| V | FK Ventspils | - | Airbus UK | 0:0 (0:0) | ||
| I: 04.07.2013 20:00 | V: 11.07.2013 17:00 | Campeones: FK Ventspils | ||||
| I | Levski Sofia | - | Irtysh Pavlodar | 0:0 (0:0) | ||
| V | Irtysh Pavlodar | - | Levski Sofia | 2:0 (2:0) | ||
| I: 04.07.2013 20:00 | V: 11.07.2013 15:00 | Campeones: Irtysh Pavlodar | ||||
| I | Prestatyn Town | - | FK Liepājas Metalurgs | 1:2 (1:1) | ||
| V | FK Liepājas Metalurgs | - | Prestatyn Town | 3:4 (1:0, 1:2, 1:2) pn. | ||
| I: 04.07.2013 20:00 | V: 11.07.2013 18:00 | Campeones: Prestatyn Town | ||||
| I | VMFD Žalgiris | - | St Patrick's Athletic | 2:2 (1:0) | ||
| V | St Patrick's Athletic | - | VMFD Žalgiris | 1:2 (0:1) | ||
| I: 04.07.2013 20:10 | V: 11.07.2013 20:45 | Campeones: VMFD Žalgiris | ||||
| I | FK Sarajevo | - | AC Libertas | 1:0 (1:0) | ||
| V | AC Libertas | - | FK Sarajevo | 1:2 (1:2) | ||
| I: 04.07.2013 20:30 | V: 11.07.2013 21:00 | Campeones: FK Sarajevo | ||||
| I | Videoton FC | - | Mladost Podgorica | 2:1 (2:1) | ||
| V | Mladost Podgorica | - | Videoton FC | 1:0 (0:0) | ||
| I: 04.07.2013 20:30 | V: 11.07.2013 17:30 | Campeones: Mladost Podgorica | ||||
| I | FK Rudar Pljevlja | - | Mika FC | 1:0 (1:0) | ||
| V | Mika FC | - | FK Rudar Pljevlja | 1:1 (1:0) | ||
| I: 04.07.2013 20:30 | V: 09.07.2013 15:30 | Campeones: FK Rudar Pljevlja | ||||
| I | NK Domžale | - | Astra Giurgiu | 0:1 (0:0) | ||
| V | Astra Giurgiu | - | NK Domžale | 2:0 (0:0) | ||
| I: 04.07.2013 20:45 | V: 11.07.2013 20:00 | Campeones: Astra Giurgiu | ||||
| I | Drogheda United | - | Malmoe | 0:0 (0:0) | ||
| V | Malmoe | - | Drogheda United | 2:0 (1:0) | ||
| I: 04.07.2013 20:45 | V: 11.07.2013 19:00 | Campeones: Malmoe | ||||
| I | Crusaders FC | - | Rosenborg BK | 1:2 (1:1) | ||
| V | Rosenborg BK | - | Crusaders FC | 7:2 (2:0) | ||
| I: 04.07.2013 20:45 | V: 11.07.2013 19:00 | Campeones: Rosenborg BK | ||||
| I | SP La Fiorita | - | Valletta FC | 0:3 (0:1) | ||
| V | Valletta FC | - | SP La Fiorita | 1:0 (0:0) | ||
| I: 04.07.2013 21:00 | V: 11.07.2013 18:00 | Campeones: Valletta FC | ||||
| I | KR Reykjavík | - | Glentoran FC | 0:0 (0:0) | ||
| V | Glentoran FC | - | KR Reykjavík | 0:3 (0:1) | ||
| I: 04.07.2013 21:15 | V: 11.07.2013 20:30 | Campeones: KR Reykjavík | ||||
| I | Breiðablik | - | FC Santa Coloma | 4:0 (3:0) | ||
| V | FC Santa Coloma | - | Breiðablik | 0:0 (0:0) | ||
| I: 04.07.2013 21:15 | V: 11.07.2013 17:30 | Campeones: Breiðablik | ||||
| I | ÍBV Vestmannaeyjar | - | HB Tórshavn | 1:1 (1:0) | ||
| V | HB Tórshavn | - | ÍBV Vestmannaeyjar | 0:1 (0:0) | ||
| I: 04.07.2013 21:30 | V: 11.07.2013 20:00 | Campeones: ÍBV Vestmannaeyjar | ||||
