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| 08.05.2009 | 19:00 | SSV Ulm 1846 | - | TSV 1860 München II | 3:0 (1:0) | |
| 19:30 | Darmstadt | - | SSV Reutlingen | 2:2 (0:1) | ||
| 09.05.2009 | 14:00 | SC Pfullendorf | - | Hessen Kassel | 1:0 (0:0) | |
| 14:00 | Viktoria Aschaffenburg | - | 1. FC Eintracht Bamberg | 2:0 (0:0) | ||
| 14:00 | Karlsruher SC II | - | SpVgg Greuther Fürth II | 2:1 (1:0) | ||
| 14:00 | 1. FC Nürnberg II | - | SC Freiburg II | 3:0 (1:0) | ||
| 14:00 | SV Wehen Wiesbaden II | - | Eintracht Frankfurt II | 0:2 (0:1) | ||
| 10.05.2009 | 14:00 | SpVgg Unterhaching II | - | Waldhof Mannheim | 1:2 (0:0) | |
| 14:00 | TSV Großbardorf | - | 1. FC Heidenheim 1846 | 2:4 (2:1) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Heidenheim 1846 | 29 | 18 | 6 | 5 | 53:32 | 21 | 60 |
| 2 |
|
Hessen Kassel | 29 | 18 | 5 | 6 | 60:27 | 33 | 59 |
| 3 |
|
Eintracht Frankfurt II | 29 | 16 | 7 | 6 | 50:29 | 21 | 55 |
| 4 |
|
1. FC Nürnberg II | 29 | 15 | 7 | 7 | 57:33 | 24 | 52 |
| 5 |
|
Waldhof Mannheim | 29 | 16 | 4 | 9 | 47:29 | 18 | 52 |
| 6 |
|
SSV Ulm 1846 | 29 | 12 | 13 | 4 | 50:26 | 24 | 49 |
| 7 |
|
SC Pfullendorf | 29 | 14 | 6 | 9 | 45:38 | 7 | 48 |
| 8 |
|
SV Wehen Wiesbaden II | 29 | 13 | 4 | 12 | 35:30 | 5 | 43 |
| 9 |
|
TSV 1860 München II | 29 | 12 | 6 | 11 | 46:37 | 9 | 42 |
| 10 |
|
1. FC Eintracht Bamberg | 29 | 12 | 5 | 12 | 47:52 | -5 | 41 |
| 11 |
|
SpVgg Greuther Fürth II | 29 | 10 | 8 | 11 | 34:31 | 3 | 38 |
| 12 |
|
Viktoria Aschaffenburg | 29 | 7 | 12 | 10 | 31:37 | -6 | 33 |
| 13 |
|
SC Freiburg II | 29 | 9 | 5 | 15 | 34:53 | -19 | 32 |
| 14 |
|
Darmstadt | 29 | 7 | 10 | 12 | 36:45 | -9 | 31 |
| 15 |
|
SSV Reutlingen | 29 | 7 | 9 | 13 | 34:51 | -17 | 30 |
| 16 |
|
Karlsruher SC II | 29 | 8 | 4 | 17 | 31:57 | -26 | 28 |
| 17 |
|
TSV Großbardorf | 29 | 3 | 6 | 20 | 27:72 | -45 | 15 |
| 18 |
|
SpVgg Unterhaching II | 29 | 3 | 5 | 21 | 27:65 | -38 | 14 |
| Ascenso | |
| Descenso |
