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| 11.04.2009 | 14:30 | Eintracht Frankfurt II | - | SpVgg Unterhaching II | 2:1 (1:0) | |
| 12.05.2009 | 18:30 | SC Freiburg II | - | SC Pfullendorf | 4:2 (1:1) | |
| 19:00 | TSV 1860 München II | - | 1. FC Eintracht Bamberg | 1:1 (0:1) | ||
| 13.05.2009 | 17:30 | SpVgg Greuther Fürth II | - | 1. FC Nürnberg II | 0:1 (0:0) | |
| 18:00 | Waldhof Mannheim | - | Karlsruher SC II | 3:0 (0:0) | ||
| 18:30 | TSV Großbardorf | - | Viktoria Aschaffenburg | 1:4 (1:2) | ||
| 18:30 | 1. FC Heidenheim 1846 | - | Darmstadt | 2:0 (2:0) | ||
| 19:00 | Hessen Kassel | - | SSV Ulm 1846 | 3:0 (3:0) | ||
| 19:00 | SSV Reutlingen | - | SV Wehen Wiesbaden II | 3:0 (1:0) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Heidenheim 1846 | 30 | 19 | 6 | 5 | 55:32 | 23 | 63 |
| 2 |
|
Hessen Kassel | 30 | 19 | 5 | 6 | 63:27 | 36 | 62 |
| 3 |
|
Eintracht Frankfurt II | 30 | 17 | 7 | 6 | 52:30 | 22 | 58 |
| 4 |
|
1. FC Nürnberg II | 30 | 16 | 7 | 7 | 58:33 | 25 | 55 |
| 5 |
|
Waldhof Mannheim | 30 | 17 | 4 | 9 | 50:29 | 21 | 55 |
| 6 |
|
SSV Ulm 1846 | 30 | 12 | 13 | 5 | 50:29 | 21 | 49 |
| 7 |
|
SC Pfullendorf | 30 | 14 | 6 | 10 | 47:42 | 5 | 48 |
| 8 |
|
TSV 1860 München II | 30 | 12 | 7 | 11 | 47:38 | 9 | 43 |
| 9 |
|
SV Wehen Wiesbaden II | 30 | 13 | 4 | 13 | 35:33 | 2 | 43 |
| 10 |
|
1. FC Eintracht Bamberg | 30 | 12 | 6 | 12 | 48:53 | -5 | 42 |
| 11 |
|
SpVgg Greuther Fürth II | 30 | 10 | 8 | 12 | 34:32 | 2 | 38 |
| 12 |
|
Viktoria Aschaffenburg | 30 | 8 | 12 | 10 | 35:38 | -3 | 36 |
| 13 |
|
SC Freiburg II | 30 | 10 | 5 | 15 | 38:55 | -17 | 35 |
| 14 |
|
SSV Reutlingen | 30 | 8 | 9 | 13 | 37:51 | -14 | 33 |
| 15 |
|
Darmstadt | 30 | 7 | 10 | 13 | 36:47 | -11 | 31 |
| 16 |
|
Karlsruher SC II | 30 | 8 | 4 | 18 | 31:60 | -29 | 28 |
| 17 |
|
TSV Großbardorf | 30 | 3 | 6 | 21 | 28:76 | -48 | 15 |
| 18 |
|
SpVgg Unterhaching II | 30 | 3 | 5 | 22 | 28:67 | -39 | 14 |
| Ascenso | |
| Descenso |
