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| 16.05.2009 | 14:00 | 1. FC Eintracht Bamberg | - | Hessen Kassel | 1:2 (1:1) | |
| 14:00 | Viktoria Aschaffenburg | - | TSV 1860 München II | 0:2 (0:2) | ||
| 14:00 | Darmstadt | - | TSV Großbardorf | 0:1 (0:0) | ||
| 14:00 | SV Wehen Wiesbaden II | - | 1. FC Heidenheim 1846 | 0:1 (0:1) | ||
| 14:00 | SC Pfullendorf | - | SpVgg Greuther Fürth II | 1:1 (0:1) | ||
| 14:00 | SSV Ulm 1846 | - | SC Freiburg II | 3:1 (2:0) | ||
| 17.05.2009 | 14:00 | SpVgg Unterhaching II | - | SSV Reutlingen | 0:1 (0:0) | |
| 14:00 | 1. FC Nürnberg II | - | Waldhof Mannheim | 1:1 (0:0) | ||
| 14:00 | Karlsruher SC II | - | Eintracht Frankfurt II | 0:2 (0:1) |
| » Clasificación | En casa | Fuera de casa | 1.ª vuelta | 2.ª vuelta |
| # | Equipo | P | V | E | D | Goles | DG | Pun. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Heidenheim 1846 | 31 | 20 | 6 | 5 | 56:32 | 24 | 66 |
| 2 |
|
Hessen Kassel | 31 | 20 | 5 | 6 | 65:28 | 37 | 65 |
| 3 |
|
Eintracht Frankfurt II | 31 | 18 | 7 | 6 | 54:30 | 24 | 61 |
| 4 |
|
1. FC Nürnberg II | 31 | 16 | 8 | 7 | 59:34 | 25 | 56 |
| 5 |
|
Waldhof Mannheim | 31 | 17 | 5 | 9 | 51:30 | 21 | 56 |
| 6 |
|
SSV Ulm 1846 | 31 | 13 | 13 | 5 | 53:30 | 23 | 52 |
| 7 |
|
SC Pfullendorf | 31 | 14 | 7 | 10 | 48:43 | 5 | 49 |
| 8 |
|
TSV 1860 München II | 31 | 13 | 7 | 11 | 49:38 | 11 | 46 |
| 9 |
|
SV Wehen Wiesbaden II | 31 | 13 | 4 | 14 | 35:34 | 1 | 43 |
| 10 |
|
1. FC Eintracht Bamberg | 31 | 12 | 6 | 13 | 49:55 | -6 | 42 |
| 11 |
|
SpVgg Greuther Fürth II | 31 | 10 | 9 | 12 | 35:33 | 2 | 39 |
| 12 |
|
Viktoria Aschaffenburg | 31 | 8 | 12 | 11 | 35:40 | -5 | 36 |
| 13 |
|
SSV Reutlingen | 31 | 9 | 9 | 13 | 38:51 | -13 | 36 |
| 14 |
|
SC Freiburg II | 31 | 10 | 5 | 16 | 39:58 | -19 | 35 |
| 15 |
|
Darmstadt | 31 | 7 | 10 | 14 | 36:48 | -12 | 31 |
| 16 |
|
Karlsruher SC II | 31 | 8 | 4 | 19 | 31:62 | -31 | 28 |
| 17 |
|
TSV Großbardorf | 31 | 4 | 6 | 21 | 29:76 | -47 | 18 |
| 18 |
|
SpVgg Unterhaching II | 31 | 3 | 5 | 23 | 28:68 | -40 | 14 |
| Ascenso | |
| Descenso |
